Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5194

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119123 to 121882 13561 mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125333 to 126456 13563

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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121,975 - 0.3
121,978 + 0.6
121,994 - 0.2
122,124 - 0.9
122,163 + -0.3
122,163 + 0.8
122,179 + 0.0
122,191 + -0.4
122,192 + -0.4
122,269 - -0.7
122,274 - -0.3
122,274 - 0.2
122,280 - 1.5
122,280 + 1.3
122,404 - -0.5
122,445 - -0.3
122,468 + -0.0
122,469 - -0.3
122,473 + 0.5
122,474 + 1.2
122,518 - 0.2
122,519 + 0.5
122,546 - 0.5
122,566 - -0.0
122,570 + 0.1
122,572 + -0.2
122,592 - 0.0
122,595 + -0.2
122,601 + -0.2
122,608 - 0.7
122,625 + 0.4
122,757 + 0.6
122,909 + -0.6
122,912 + 1.4
123,451 + 13562 mRNA_5194 0.36 -0.5
123,451 - 13562 mRNA_5194 0.36 -0.3
123,658 + 13562 mRNA_5194 0.47 0.3
124,022 - 13562 mRNA_5194 0.67 -0.2
124,022 - 13562 mRNA_5194 0.67 0.5
124,052 - 13562 mRNA_5194 0.69 -1.5
124,183 + 13562 mRNA_5194 0.76 1.3
124,241 - 13562 mRNA_5194 0.79 -0.7
124,511 - -0.2
124,556 - -0.1
124,583 - 0.3
124,586 - -0.6
124,591 - -1.0
124,616 + -1.3
124,624 - -0.4
124,645 + 0.8
124,732 - -0.4
124,773 + -0.6
124,775 + -0.0
124,775 + -0.4
124,776 - 1.0
124,781 + -0.6
124,784 - -0.1
124,788 + 0.5
124,798 + -0.2
124,798 + -0.8
124,801 - -1.0
124,803 + -0.3
124,805 - 2.0
124,807 + 0.8
124,812 + -0.1
124,896 + -0.6
124,927 + 0.2
124,941 - -0.7
124,961 - 0.4
124,963 + 0.1
124,968 - -0.0
124,968 + 1.2
124,968 + 0.7
124,970 - 0.6
124,972 + 0.1
124,975 + -0.3
124,983 + 0.1
124,984 + 0.2
125,005 - -0.1
125,016 + -1.1
125,040 - 0.1
125,043 - 0.1
125,050 + 0.1
125,223 + -0.5
125,227 + -0.0