Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5164

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5163: 13531 - Hypothetical Protein, at 48190 to 49744 13531 mRNA_5164: 13532 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 50171 to 51821 13532 mRNA_5165: 13533 - Hypothetical Protein, at 52326 to 52658 13533

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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49,265 + 13531 mRNA_5163 0.69 0.3
49,292 - 13531 mRNA_5163 0.71 0.5
49,324 + 13531 mRNA_5163 0.73 1.3
49,385 + 13531 mRNA_5163 0.77 -0.9
49,489 + 13531 mRNA_5163 0.84 1.6
49,627 + 0.1
49,710 + -1.1
49,776 - 0.5
49,793 + -0.8
50,191 - -0.8
50,200 + 0.1
50,607 - 13532 mRNA_5164 0.26 0.1
50,732 - 13532 mRNA_5164 0.34 0.5
51,158 - 13532 mRNA_5164 0.60 -0.4
51,173 + 13532 mRNA_5164 0.61 -1.5
51,441 + 13532 mRNA_5164 0.77 0.4
51,838 + 0.5
51,855 + 0.8
51,875 - -0.1
51,878 - -0.8
51,881 - 0.2
51,939 + 0.6
51,959 + 0.9
52,043 - -0.8
52,043 - -0.1
52,057 + 0.1
52,061 - -1.7
52,070 + 0.1
52,071 + 0.0
52,073 - -0.4
52,087 - -2.0
52,203 + -1.1
52,228 - 0.4
52,359 + -0.8
52,371 - 13533 mRNA_5165 0.14 -0.5
52,372 + 13533 mRNA_5165 0.14 -0.1
52,438 + 13533 mRNA_5165 0.34 0.1
52,453 + 13533 mRNA_5165 0.38 0.3
52,460 - 13533 mRNA_5165 0.40 -0.3
52,486 - 13533 mRNA_5165 0.48 -0.0
52,507 - 13533 mRNA_5165 0.54 -0.3
52,510 - 13533 mRNA_5165 0.55 0.1
52,510 - 13533 mRNA_5165 0.55 1.0
52,517 + 13533 mRNA_5165 0.57 0.4
52,520 + 13533 mRNA_5165 0.58 0.1
52,522 + 13533 mRNA_5165 0.59 0.1
52,523 + 13533 mRNA_5165 0.59 -1.5
52,524 - 13533 mRNA_5165 0.59 1.8
52,528 + 13533 mRNA_5165 0.61 -0.8
52,530 - 13533 mRNA_5165 0.61 1.5
52,536 + 13533 mRNA_5165 0.63 0.1
52,536 - 13533 mRNA_5165 0.63 2.8
52,538 - 13533 mRNA_5165 0.64 -0.0
52,542 + 13533 mRNA_5165 0.65 -0.2
52,543 + 13533 mRNA_5165 0.65 -1.4
52,560 + 13533 mRNA_5165 0.70 1.0
52,560 + 13533 mRNA_5165 0.70 0.4
52,561 + 13533 mRNA_5165 0.71 1.3
52,567 - 13533 mRNA_5165 0.72 0.1
52,574 - 13533 mRNA_5165 0.74 -0.3
52,577 + 13533 mRNA_5165 0.75 0.1
52,581 - 13533 mRNA_5165 0.77 1.0
52,582 + 13533 mRNA_5165 0.77 -0.4
52,583 - 13533 mRNA_5165 0.77 -1.4
52,584 + 13533 mRNA_5165 0.77 -1.2
52,586 + 13533 mRNA_5165 0.78 0.7
52,596 - 13533 mRNA_5165 0.81 -0.3
52,603 - 13533 mRNA_5165 0.83 -0.2
52,648 - 0.4
52,814 + -0.0