Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5123

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1811957 to 1814516 13490 mRNA_5123: 13491 - K14826 FPR3_4 FK506-binding nuclear protein, at 1815032 to 1816842 13491 mRNA_5124: 13492 - K13248 PHOSPHO2 pyridoxal phosphate phosphatase PHOSPHO2, at 1816992 to 1818246 13492

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,814,088 + 13490 mRNA_5122 0.83 -0.4
1,814,091 - 13490 mRNA_5122 0.83 1.0
1,814,121 - 13490 mRNA_5122 0.85 -0.4
1,814,140 + 13490 mRNA_5122 0.85 0.6
1,814,304 + -0.0
1,814,422 + -0.1
1,815,304 + 13491 mRNA_5123 0.15 1.7
1,815,599 - 13491 mRNA_5123 0.31 -0.5
1,815,705 - 13491 mRNA_5123 0.37 0.3
1,816,014 - 13491 mRNA_5123 0.54 -0.2
1,816,454 - 13491 mRNA_5123 0.79 0.2
1,816,500 + 13491 mRNA_5123 0.81 0.2
1,816,609 + 13491 mRNA_5123 0.87 0.4
1,816,766 - -0.4
1,816,888 + 0.0
1,816,895 + 0.0
1,816,903 - -0.3
1,816,913 - -0.1
1,816,922 + 0.3
1,816,923 - 0.6
1,816,923 - 1.0