Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5079

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5078: 13446 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1694035 to 1697967 13446 mRNA_5079: 13447 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 1698116 to 1699686 13447 mRNA_5080: 13448 - K12486 SMAP stromal membrane-associated protein, at 1699891 to 1701497 13448

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,698,164 - 0.2
1,698,381 + 13447 mRNA_5079 0.17 -0.1
1,699,265 + 13447 mRNA_5079 0.73 0.1
1,699,415 + 13447 mRNA_5079 0.83 -0.0
1,699,421 - 13447 mRNA_5079 0.83 1.6
1,699,556 - 2.6
1,699,561 - -0.5
1,699,565 - 0.0
1,699,581 - 1.6
1,699,712 + -1.2
1,699,716 + 0.2
1,699,734 + 0.3
1,699,736 - -0.8
1,700,001 + -0.2
1,700,147 + 13448 mRNA_5080 0.16 -0.1
1,700,282 - 13448 mRNA_5080 0.24 0.2
1,700,301 - 13448 mRNA_5080 0.26 0.7
1,700,317 + 13448 mRNA_5080 0.27 0.3