Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5076

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5075: 13443 - K00958 sat, met3 sulfate adenylyltransferase, at 1688216 to 1690274 13443 mRNA_5076: 13444 - K00588 E2.1.1.104 caffeoyl-CoA O-methyltransferase, at 1690451 to 1691745 13444 mRNA_5077: 13445 - KOG1663 O-methyltransferase, at 1692035 to 1693349 13445

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,689,579 - 13443 mRNA_5075 0.66 0.2
1,689,597 - 13443 mRNA_5075 0.67 -0.4
1,689,606 + 13443 mRNA_5075 0.68 -1.0
1,689,874 + 13443 mRNA_5075 0.81 0.6
1,690,063 + 13443 mRNA_5075 0.90 -1.2
1,690,154 - 0.9
1,690,174 - -0.3
1,690,321 - 0.4
1,690,332 + 1.3
1,690,333 - -0.2
1,690,333 - 0.0
1,690,342 + -0.6
1,690,350 + 0.1
1,690,355 + -1.3
1,690,357 + 0.5
1,690,357 + -0.7
1,690,359 + -0.3
1,690,359 - -0.2
1,690,362 + 0.2
1,690,362 - -0.2
1,690,364 + 0.7
1,690,378 + -0.1
1,690,386 - 1.2
1,690,472 + -1.6
1,690,536 + -2.5
1,691,046 + 13444 mRNA_5076 0.46 -0.6
1,691,265 - 13444 mRNA_5076 0.63 0.6
1,691,364 + 13444 mRNA_5076 0.71 0.0
1,691,365 + 13444 mRNA_5076 0.71 -0.3
1,691,634 + 1.0
1,691,678 + 0.7