Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5016

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1553559 to 1555008 13383 mRNA_5016: 13384 - BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus], at 1555727 to 1556735 13384 mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1557007 to 1558590 13385

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,554,906 - 0.2
1,554,940 + -0.7
1,555,038 + -0.7
1,555,080 - 0.8
1,555,086 + -0.0
1,555,235 - 0.2
1,555,270 + 0.9
1,555,516 - -0.6
1,555,780 + -0.1
1,555,816 + -1.8
1,555,818 + -0.8
1,555,820 + 1.1
1,555,947 + 13384 mRNA_5016 0.22 -0.3
1,555,965 + 13384 mRNA_5016 0.24 0.4
1,556,379 - 13384 mRNA_5016 0.65 -0.6
1,556,540 + 13384 mRNA_5016 0.81 0.9
1,556,548 - 13384 mRNA_5016 0.81 0.0
1,556,680 - -0.3
1,556,788 - 1.2
1,556,838 + -0.3
1,556,839 - -0.5
1,556,844 + -0.8
1,556,848 - -0.0
1,556,854 + -0.7
1,556,855 - -0.1
1,556,856 + 0.6
1,556,859 - -1.5
1,556,859 - -0.1
1,557,140 - 1.5
1,557,305 - 13385 mRNA_5017 0.19 -0.5
1,557,421 + 13385 mRNA_5017 0.26 0.0