Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5015

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1549250 to 1553078 13382 mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1553559 to 1555008 13383 mRNA_5016: 13384 - BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus], at 1555727 to 1556735 13384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,552,690 + 13382 mRNA_5014 0.90 0.5
1,552,763 - 0.2
1,552,839 - 0.5
1,552,845 + 0.6
1,552,985 - 0.2
1,553,003 + -0.4
1,553,084 - -0.8
1,553,108 + -0.3
1,553,249 + -0.1
1,553,273 + 0.9
1,553,283 - -1.8
1,553,285 + -0.9
1,553,287 + -1.2
1,553,290 - -1.3
1,553,292 - -0.2
1,553,293 - 0.9
1,553,294 + 0.4
1,553,298 + -1.4
1,553,298 + -1.8
1,553,301 - 0.2
1,553,303 - -0.7
1,553,306 + 0.8
1,553,310 + 0.0
1,553,311 + 0.8
1,553,313 + -0.2
1,553,313 - 0.8
1,553,316 - -0.5
1,553,318 - -1.2
1,553,323 + -0.0
1,553,336 + 0.5
1,553,344 + 0.7
1,553,364 - 0.3
1,553,371 + 0.1
1,553,383 - -0.6
1,553,384 + 0.2
1,553,394 + -0.7
1,553,396 - -0.1
1,553,403 + -0.6
1,553,413 + 0.5
1,553,416 - 0.6
1,553,417 + 0.6
1,553,426 - -0.0
1,553,427 + -1.1
1,553,428 - -0.1
1,553,437 + -0.2
1,553,445 + 0.5
1,553,445 + 0.6
1,553,448 + -0.7
1,553,451 + -0.5
1,553,451 - 0.1
1,553,460 + 1.2
1,553,484 + 0.1
1,553,485 - -0.6
1,553,485 - 0.1
1,553,491 - 1.4
1,553,602 - 0.8
1,553,603 + -0.8
1,553,606 - 0.8
1,553,719 + 13383 mRNA_5015 0.11 -1.7
1,553,758 + 13383 mRNA_5015 0.14 -0.6
1,553,772 + 13383 mRNA_5015 0.15 -0.5
1,553,869 + 13383 mRNA_5015 0.21 0.9
1,554,153 - 13383 mRNA_5015 0.41 -0.1
1,554,336 - 13383 mRNA_5015 0.54 1.3
1,554,381 + 13383 mRNA_5015 0.57 -0.3
1,554,640 + 13383 mRNA_5015 0.75 -1.2
1,554,906 - 0.2
1,554,940 + -0.7
1,555,038 + -0.7
1,555,080 - 0.8
1,555,086 + -0.0
1,555,235 - 0.2
1,555,270 + 0.9
1,555,516 - -0.6
1,555,780 + -0.1
1,555,816 + -1.8
1,555,818 + -0.8
1,555,820 + 1.1
1,555,947 + 13384 mRNA_5016 0.22 -0.3
1,555,965 + 13384 mRNA_5016 0.24 0.4