Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5009

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5008: 13376 - KOG2319 Vacuolar assembly/sorting protein VPS9, at 1530347 to 1531248 13376 mRNA_5009: 13377 - K07195 EXOC7, EXO70 exocyst complex component 7, at 1531296 to 1533936 13377 mRNA_5010: 13378 - K17576 PPP1R37, LRRC68 protein phosphatase 1 regulatory subunit 37, at 1534443 to 1540178 13378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,530,300 - -0.2
1,530,306 + -0.3
1,530,446 - 13376 mRNA_5008 0.11 -1.6
1,530,585 - 13376 mRNA_5008 0.26 0.1
1,530,603 + 13376 mRNA_5008 0.28 0.5
1,531,028 + 13376 mRNA_5008 0.75 -0.8
1,531,043 + 13376 mRNA_5008 0.77 -0.8
1,531,050 + 13376 mRNA_5008 0.78 0.3
1,531,176 - 0.5
1,531,455 - 1.1
1,531,459 - -1.0
1,532,062 - 13377 mRNA_5009 0.29 -0.3
1,532,174 - 13377 mRNA_5009 0.33 0.1
1,532,185 + 13377 mRNA_5009 0.34 0.8
1,532,191 - 13377 mRNA_5009 0.34 0.9
1,532,219 - 13377 mRNA_5009 0.35 0.9
1,532,488 + 13377 mRNA_5009 0.45 1.3
1,532,508 + 13377 mRNA_5009 0.46 0.2
1,532,777 - 13377 mRNA_5009 0.56 -0.3
1,532,784 + 13377 mRNA_5009 0.56 0.0
1,532,880 + 13377 mRNA_5009 0.60 -0.7
1,532,947 - 13377 mRNA_5009 0.63 -0.4
1,533,031 + 13377 mRNA_5009 0.66 0.5
1,533,271 - 13377 mRNA_5009 0.75 0.6
1,533,478 + 13377 mRNA_5009 0.83 -0.3
1,533,627 + 13377 mRNA_5009 0.88 -1.0
1,533,912 - 0.3
1,534,064 - -0.0
1,534,071 + -0.1
1,534,182 - 0.3
1,534,195 - -0.9
1,534,196 - -0.0
1,534,200 - 1.0
1,534,203 - -1.2
1,534,204 + 0.1
1,534,212 + -0.3
1,534,231 + -0.1
1,534,508 - 0.1
1,534,511 + 0.2
1,534,799 - -0.5