Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5007

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1525001 to 1528336 13374 mRNA_5007: 13375 - Hypothetical Protein, at 1528633 to 1529200 13375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,527,654 + 13374 mRNA_5006 0.80 0.4
1,527,951 - 13374 mRNA_5006 0.88 -1.4
1,528,028 - 0.3
1,528,081 - -0.6
1,528,219 + 0.5
1,528,244 + 0.7
1,528,387 - 0.0
1,528,390 + -1.2
1,528,392 - -0.4
1,528,395 + 0.2
1,528,395 + -0.0
1,528,397 - 0.2
1,528,407 - 1.6
1,528,412 + 0.1
1,528,417 - -0.2
1,528,444 - 1.0
1,528,540 - 0.4
1,528,554 + 0.8
1,528,565 + -0.9
1,528,568 - -0.8
1,528,614 - -0.8
1,528,622 + -0.1
1,528,727 - 13375 mRNA_5007 0.17 2.0
1,528,740 + 13375 mRNA_5007 0.19 -1.0
1,528,743 + 13375 mRNA_5007 0.19 1.4
1,528,743 - 13375 mRNA_5007 0.19 0.2
1,528,745 - 13375 mRNA_5007 0.20 -1.1
1,528,747 + 13375 mRNA_5007 0.20 -1.1
1,528,879 - 13375 mRNA_5007 0.43 0.5
1,529,016 - 13375 mRNA_5007 0.67 0.3
1,529,038 - 13375 mRNA_5007 0.71 -0.2
1,529,040 - 13375 mRNA_5007 0.72 -0.2
1,529,041 + 13375 mRNA_5007 0.72 -0.1
1,529,629 + -0.9
1,529,801 - 0.2
1,529,810 + 0.5
1,529,876 - 0.2
1,529,925 - -0.2
1,529,950 + -0.2
1,529,956 + -0.3
1,529,957 - -1.4
1,529,958 - -0.0
1,529,961 - 0.6
1,529,961 + 0.5
1,529,963 + 0.4
1,529,967 - -0.6
1,529,971 + 0.5
1,529,976 - -0.7
1,529,978 - -0.3
1,529,980 - 0.0
1,529,983 + 1.3
1,529,993 + -0.2
1,530,005 - -1.1
1,530,089 + 0.5
1,530,095 - -0.2
1,530,096 - 0.7
1,530,102 - -0.0
1,530,103 + -1.7
1,530,107 + 0.4
1,530,126 + 1.8
1,530,159 - -1.6
1,530,161 - -1.2
1,530,168 - -0.2
1,530,169 - 1.6
1,530,170 - -0.2
1,530,188 + -0.4