Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4852

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1146547 to 1149479 13219 mRNA_4852: 13220 - Hypothetical Protein, at 1149636 to 1152739 13220 mRNA_4853: 13221 - Hypothetical Protein, at 1153001 to 1154455 13221

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,148,743 - 13219 mRNA_4851 0.75 0.4
1,149,121 - 13219 mRNA_4851 0.88 -0.4
1,149,121 - 13219 mRNA_4851 0.88 0.0
1,149,153 - 13219 mRNA_4851 0.89 -1.8
1,149,266 + 0.2
1,149,274 - 0.2
1,149,283 - -0.5
1,149,426 + 0.9
1,149,427 - -0.4
1,149,476 + -0.2
1,149,560 - -1.2
1,149,560 - 0.9
1,149,570 - 0.3
1,149,599 + -0.3
1,149,694 + 0.5
1,149,717 - -0.2
1,149,718 + 0.3
1,149,760 - -1.4
1,150,034 + 13220 mRNA_4852 0.13 -1.1
1,150,158 + 13220 mRNA_4852 0.17 -2.0
1,150,164 - 13220 mRNA_4852 0.17 1.1
1,150,326 + 13220 mRNA_4852 0.22 0.1
1,150,345 - 13220 mRNA_4852 0.23 -0.9
1,150,438 - 13220 mRNA_4852 0.26 -0.7
1,150,460 + 13220 mRNA_4852 0.27 0.4
1,150,469 - 13220 mRNA_4852 0.27 0.5
1,150,610 - 13220 mRNA_4852 0.31 -1.0
1,150,946 + 13220 mRNA_4852 0.42 0.4
1,151,187 - 13220 mRNA_4852 0.50 0.0
1,151,324 - 13220 mRNA_4852 0.54 2.1
1,151,459 + 13220 mRNA_4852 0.59 -0.2
1,151,462 - 13220 mRNA_4852 0.59 0.7
1,151,727 + 13220 mRNA_4852 0.67 -1.6
1,151,880 + 13220 mRNA_4852 0.72 -1.0
1,152,634 - -0.5
1,152,757 - -0.1
1,152,766 + 0.2
1,153,048 + 1.1
1,153,077 + 0.5
1,153,140 + -0.5
1,153,205 + 13221 mRNA_4853 0.14 0.6
1,153,274 - 13221 mRNA_4853 0.19 -1.0
1,153,457 - 13221 mRNA_4853 0.31 -0.4