Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4783

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4782: 13150 - Hypothetical Protein, at 1002012 to 1003066 13150 mRNA_4783: 13151 - Hypothetical Protein, at 1003364 to 1007134 13151 mRNA_4784: 13152 - BLAST calmodulin-like protein [Mycena chlorophos], at 1008050 to 1008769 13152

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,002,599 - 13150 mRNA_4782 0.56 -0.7
1,002,987 + -0.9
1,003,129 - -0.7
1,003,173 + -0.2
1,003,267 - 0.1
1,003,297 - 0.9
1,003,362 + -0.6
1,003,402 - 0.8
1,003,556 + 0.1
1,003,691 - -0.0
1,003,869 + 13151 mRNA_4783 0.13 -0.2
1,003,976 + 13151 mRNA_4783 0.16 0.3
1,003,976 + 13151 mRNA_4783 0.16 -0.2
1,003,996 + 13151 mRNA_4783 0.17 1.2
1,004,121 + 13151 mRNA_4783 0.20 0.2
1,004,162 + 13151 mRNA_4783 0.21 1.5
1,004,299 - 13151 mRNA_4783 0.25 0.6
1,004,310 + 13151 mRNA_4783 0.25 -1.5
1,004,349 + 13151 mRNA_4783 0.26 -1.2
1,004,565 + 13151 mRNA_4783 0.32 0.5
1,004,740 - 13151 mRNA_4783 0.36 -0.1
1,004,845 - 13151 mRNA_4783 0.39 -0.0
1,004,852 - 13151 mRNA_4783 0.39 -0.1
1,004,857 - 13151 mRNA_4783 0.40 -0.2
1,004,892 - 13151 mRNA_4783 0.41 -0.3
1,004,897 - 13151 mRNA_4783 0.41 -0.3
1,004,901 + 13151 mRNA_4783 0.41 0.2
1,004,902 + 13151 mRNA_4783 0.41 -0.8
1,004,905 - 13151 mRNA_4783 0.41 -1.1
1,004,905 - 13151 mRNA_4783 0.41 -0.7
1,004,907 + 13151 mRNA_4783 0.41 -1.4
1,004,914 - 13151 mRNA_4783 0.41 -1.2
1,004,930 - 13151 mRNA_4783 0.42 0.5
1,004,930 - 13151 mRNA_4783 0.42 0.6
1,004,930 - 13151 mRNA_4783 0.42 0.0
1,004,950 + 13151 mRNA_4783 0.42 -0.0
1,004,972 + 13151 mRNA_4783 0.43 0.9
1,004,989 + 13151 mRNA_4783 0.43 -0.6
1,004,992 + 13151 mRNA_4783 0.43 1.1
1,004,992 - 13151 mRNA_4783 0.43 -0.4
1,005,033 - 13151 mRNA_4783 0.44 -0.3
1,005,037 - 13151 mRNA_4783 0.44 0.2
1,005,038 + 13151 mRNA_4783 0.44 -2.0
1,005,038 + 13151 mRNA_4783 0.44 0.1
1,005,039 - 13151 mRNA_4783 0.44 -1.9
1,005,041 + 13151 mRNA_4783 0.44 0.2
1,005,042 - 13151 mRNA_4783 0.44 -0.8
1,005,044 - 13151 mRNA_4783 0.45 1.6
1,005,046 + 13151 mRNA_4783 0.45 -0.6
1,005,048 + 13151 mRNA_4783 0.45 0.1
1,005,051 + 13151 mRNA_4783 0.45 0.6
1,005,056 - 13151 mRNA_4783 0.45 0.4
1,005,059 - 13151 mRNA_4783 0.45 -0.9
1,005,063 - 13151 mRNA_4783 0.45 -0.3
1,005,063 + 13151 mRNA_4783 0.45 -0.4
1,005,069 + 13151 mRNA_4783 0.45 -0.1
1,005,070 + 13151 mRNA_4783 0.45 0.1
1,005,079 + 13151 mRNA_4783 0.45 0.5
1,005,202 - 13151 mRNA_4783 0.49 0.1
1,005,489 - 13151 mRNA_4783 0.56 -0.2
1,005,801 - 13151 mRNA_4783 0.65 -0.0
1,006,092 + 13151 mRNA_4783 0.72 -0.2
1,006,529 - 13151 mRNA_4783 0.84 0.6
1,006,659 + 13151 mRNA_4783 0.87 1.3
1,006,774 + -0.9
1,006,812 + -0.7
1,006,834 + 1.1
1,006,837 + -0.7
1,006,901 - 1.5
1,006,910 - -0.9
1,006,915 + 0.7
1,006,922 - 1.5
1,006,929 + -0.5
1,006,946 + -0.2
1,006,956 - 2.1
1,006,959 - 0.0
1,006,971 - -1.5
1,006,980 - 0.7
1,006,981 - 0.4
1,006,990 - 1.5
1,006,991 - 0.4
1,006,991 + -0.6
1,007,000 + -0.7
1,007,006 + 0.6
1,007,008 + -0.3
1,007,008 + 0.7
1,007,023 + 0.3
1,007,066 - -0.1
1,007,073 - 0.3
1,007,076 - -0.4
1,007,082 + 0.5
1,007,097 - -2.2
1,007,110 + 0.1
1,007,211 + 0.1
1,007,261 - -0.6
1,007,400 + -0.1
1,007,414 - -0.0
1,007,430 + -0.1
1,007,483 - 0.1
1,007,664 - 0.0
1,007,677 + -0.3
1,007,684 - 0.9
1,007,700 - 0.1
1,007,716 - 0.2
1,007,732 - -0.4
1,007,845 + 0.7
1,008,134 - 13152 mRNA_4784 0.12 0.0