Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4611

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578505 to 580784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581110 to 587880 12979

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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580,383 + 12978 mRNA_4610 0.82 -0.8
580,939 + -0.3
581,229 - 0.1
581,556 + 0.5
581,813 - 12979 mRNA_4611 0.10 -1.0
582,440 + 12979 mRNA_4611 0.20 -0.2
582,440 + 12979 mRNA_4611 0.20 -1.7
583,201 - 12979 mRNA_4611 0.31 -0.7
583,212 - 12979 mRNA_4611 0.31 1.0
583,743 + 12979 mRNA_4611 0.39 -0.5
583,903 - 12979 mRNA_4611 0.41 -0.1
583,937 + 12979 mRNA_4611 0.42 0.4
584,034 - 12979 mRNA_4611 0.43 0.4
584,982 + 12979 mRNA_4611 0.57 -1.4
585,009 + 12979 mRNA_4611 0.58 0.1
585,175 + 12979 mRNA_4611 0.60 1.2
585,542 - 12979 mRNA_4611 0.65 -2.4
585,561 + 12979 mRNA_4611 0.66 0.4
585,627 - 12979 mRNA_4611 0.67 -0.7
586,045 - 12979 mRNA_4611 0.73 -0.9
586,051 + 12979 mRNA_4611 0.73 -0.7
586,166 - 12979 mRNA_4611 0.75 -0.3
586,626 - 12979 mRNA_4611 0.81 0.0
586,709 + 12979 mRNA_4611 0.83 0.0
586,743 - 12979 mRNA_4611 0.83 0.1
587,186 - 12979 mRNA_4611 0.90 -0.2
587,331 + -0.8
587,640 - -0.0
587,930 - -0.2
588,066 - 0.4
588,070 - 1.0
588,076 - 0.1
588,098 - 0.8
588,174 - -0.3
588,176 + 0.3
588,195 - 0.6
588,250 - -0.6
588,258 - 1.2
588,259 - -0.9
588,285 + -0.3
588,311 + 0.6
588,318 + 0.2
588,320 - -0.8
588,330 - -0.5
588,330 + 1.1
588,347 - 0.8
588,366 - -0.5
588,384 + 0.1
588,385 - 0.9
588,389 + -1.7
588,392 - -1.0
588,402 + -0.6
588,408 + -1.2
588,416 - -0.1
588,421 + 0.1
588,424 - 0.7
588,487 + 0.6
588,538 - 0.1
588,540 - 0.2
588,543 + -0.7
588,545 + -0.4
588,546 + -0.2
588,607 - -0.1
588,609 - 0.2
588,610 + -0.2
588,708 - -0.9
588,712 - -0.4
588,715 + -0.9
588,717 + 0.9
588,767 - -1.4
588,779 - 0.1
588,839 - -1.7
588,857 - -0.5
588,865 + 0.2