Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4610

Experiments: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578505 to 580784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581110 to 587880 12979

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
577,511 - 0.1
577,693 - -1.1
577,696 + 0.1
578,122 - 0.8
578,248 - 1.9
578,260 + -0.7
578,264 + -1.1
578,270 + -0.8
578,272 + -1.2
578,277 + -0.7
578,280 - -0.1
578,290 - -0.2
578,358 - -1.9
578,411 - 1.0
578,411 + 0.5
578,427 - -0.2
578,435 - 0.4
578,444 + 0.4
578,721 - 0.5
578,731 - -0.6
578,739 + 12978 mRNA_4610 0.10 0.4
578,747 + 12978 mRNA_4610 0.11 1.6
578,752 + 12978 mRNA_4610 0.11 1.0
578,879 - 12978 mRNA_4610 0.16 0.2
578,916 + 12978 mRNA_4610 0.18 -0.3
578,946 - 12978 mRNA_4610 0.19 0.1
579,009 - 12978 mRNA_4610 0.22 -0.2
579,040 + 12978 mRNA_4610 0.23 0.7
579,320 - 12978 mRNA_4610 0.36 -0.3
579,321 + 12978 mRNA_4610 0.36 0.6
579,765 + 12978 mRNA_4610 0.55 0.2
580,383 + 12978 mRNA_4610 0.82 -0.8
580,939 + -0.3
581,229 - 0.1
581,556 + 0.5