Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4592

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538604 to 541004 12959 mRNA_4592: 12960 - K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A, at 541515 to 545296 12960 mRNA_4593: 12961 - K05286 PIGB phosphatidylinositol glycan, class B, at 546117 to 548213 12961

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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540,593 - 12959 mRNA_4591 0.83 1.1
540,609 + 12959 mRNA_4591 0.84 0.6
540,707 - 12959 mRNA_4591 0.88 0.4
540,881 - -0.7
541,009 - 0.1
541,017 + 0.5
541,029 + -1.6
541,171 - -0.4
541,174 - -1.0
541,175 - 0.1
541,186 - -0.2
541,194 - 0.4
541,198 - 0.2
541,200 + -0.1
541,312 + 0.1
541,317 + -0.4
541,377 + -0.5
541,386 - 0.3
541,394 - -0.3
541,544 + 0.4
541,548 + -0.2
542,418 + 12960 mRNA_4592 0.24 0.5
542,812 - 12960 mRNA_4592 0.34 -1.6
545,305 + -1.6
545,462 - -0.0
545,665 + 0.8
545,706 + -0.6
545,751 - -0.3
545,752 + -0.4
545,760 + 0.5
545,763 + -0.9
545,777 - 1.9
545,839 - 0.8
545,941 - 0.9
545,960 + 0.1
545,969 - -0.6
545,976 + -0.5
545,991 - -0.7
545,991 - 0.2
546,112 + 0.7