Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4570

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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490,963 - -0.3
490,972 + -0.7
490,976 + -0.6
490,980 + -1.1
490,983 - -0.4
490,990 + 0.5
491,029 + -0.1
491,030 - 1.5
491,040 + 1.4
491,041 - -0.9
491,133 - 1.7
491,145 + -0.9
491,150 - 1.1
491,181 + -0.2
491,193 + -0.2
491,199 - -1.4
491,280 + 0.6
491,314 + 12938 mRNA_4570 0.12 -0.1
491,318 - 12938 mRNA_4570 0.12 -0.0
491,442 - 12938 mRNA_4570 0.22 -0.8
491,453 - 12938 mRNA_4570 0.23 -0.2
491,542 - 12938 mRNA_4570 0.31 -0.4
491,568 - 12938 mRNA_4570 0.33 0.2
491,807 - 12938 mRNA_4570 0.53 1.6
491,824 + 12938 mRNA_4570 0.54 1.3
491,977 - 12938 mRNA_4570 0.67 0.1
491,987 - 12938 mRNA_4570 0.68 0.4
491,991 + 12938 mRNA_4570 0.68 0.1
492,152 + 12938 mRNA_4570 0.82 1.2
492,262 + 0.1
492,286 + 0.5
492,298 + -0.0
492,316 + 0.2
492,426 - -0.5
492,438 - -0.9
492,449 - -0.1
492,459 + 0.8
492,569 + -0.0
492,576 + 1.2
492,581 - 0.6
492,587 - -0.9
492,591 - 0.2
492,598 - 0.5
492,604 - 0.4
492,610 + 0.1
492,611 + -0.0
492,612 + 0.7
492,707 - 0.4
492,717 - 0.3
492,726 + 0.9
492,726 - -0.6
492,726 + 0.1
492,728 + 0.3
492,740 + -0.0
492,748 - -0.2
492,748 + 0.3
492,753 + -0.4
492,754 + 0.4
492,758 - -0.1
492,776 - 0.3
492,777 - -0.1
492,783 - 0.1
492,799 - 0.3
492,799 + -0.2
492,800 - 1.2
492,803 - -0.5
492,831 - 0.5
492,832 - 0.3
492,841 + 0.2
492,849 - 1.5
492,853 + -0.1
492,859 - 0.5
492,863 + 0.0
492,863 + -0.7
492,872 + 0.2
492,873 + 0.8
492,873 - 0.9
492,875 + 0.2
492,884 - -0.1
492,886 - -1.1
492,889 - -1.0
492,898 - 0.3
492,907 + -0.7
492,919 - 0.6
492,919 - 0.8
492,947 - 0.6
492,947 + -0.1
492,949 - -0.8
492,954 + 0.1
492,960 - -0.1
492,994 - 0.6
493,025 + 0.3
493,089 + 0.5
493,166 - -0.3