Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4567

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479407 to 483783 12934 mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484052 to 485585 12935 mRNA_4568: 12936 - Hypothetical Protein, at 485805 to 489325 12936

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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483,245 + 12934 mRNA_4566 0.88 1.0
483,686 + 0.4
483,830 + 0.3
483,830 - 1.1
483,848 - -0.4
483,922 - -0.0
483,938 - -1.3
483,988 - -1.3
484,000 - -2.1
484,002 + -0.5
484,018 + 0.1
484,697 + 12935 mRNA_4567 0.42 0.7
485,134 - 12935 mRNA_4567 0.71 -0.7
485,251 - 12935 mRNA_4567 0.78 -0.2
485,252 + 12935 mRNA_4567 0.78 0.4
485,885 + 0.8
486,172 + 12936 mRNA_4568 0.10 -0.3
486,349 - 12936 mRNA_4568 0.15 0.0
486,444 + 12936 mRNA_4568 0.18 -1.4