Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4563

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466499 to 468748 12930 mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469300 to 472637 12931 mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473313 to 477203 12932

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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468,511 + 12930 mRNA_4562 0.89 1.0
468,546 - -0.8
468,565 + 0.3
468,592 - -0.0
468,874 - -0.2
469,604 - 0.5
470,580 - 12931 mRNA_4563 0.38 -0.9
470,596 - 12931 mRNA_4563 0.39 -0.1
470,712 - 12931 mRNA_4563 0.42 -0.1
470,721 + 12931 mRNA_4563 0.43 0.2
472,447 + 0.5
472,696 - -1.2
472,715 + -0.4
472,734 + -0.7
473,019 + 0.4
473,020 - -0.5
473,027 - 0.4
473,035 - 1.2
473,048 + 0.5
473,057 - -0.1
473,149 + 0.1
473,157 + -0.9
473,172 + -0.8
473,174 + -0.2
473,175 - 0.3
473,176 + -1.6
473,176 - -0.2
473,180 - 0.6
473,181 + 1.2
473,187 + -0.1
473,192 - 0.2
473,193 + -1.3
473,196 + -0.0
473,199 + -0.2
473,213 - -0.4
473,241 + -1.8
473,243 - -1.1
473,317 - 0.9
473,346 + -0.3
473,363 - 0.1
473,366 + -1.5
473,376 + -0.2
473,521 + -0.7