Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4552

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4551: 12919 - HMMPfam-Whi5 like-PF08528, at 440384 to 442291 12919 mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442717 to 444581 12920 mRNA_4553: 12921 - SUPERFAMILY--SSF81383, at 445530 to 447635 12921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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441,750 - 12919 mRNA_4551 0.72 0.2
441,926 + 12919 mRNA_4551 0.81 0.6
442,201 - 0.6
442,202 - -0.5
442,212 + 0.4
442,337 - -0.1
442,339 + 0.9
442,340 - 0.2
442,351 + 1.3
442,383 + -0.6
442,495 - -0.2
442,503 - 0.0
442,511 + 0.2
442,517 + 1.0
442,523 - 0.3
442,524 + 0.6
442,529 + 0.4
442,530 - 0.8
442,757 - -0.1
442,875 + -0.8
442,964 + 12920 mRNA_4552 0.13 0.9
443,539 + 12920 mRNA_4552 0.44 -1.1
443,672 - 12920 mRNA_4552 0.51 1.2
444,009 + 12920 mRNA_4552 0.69 -1.1
444,009 - 12920 mRNA_4552 0.69 -0.4
444,088 - 12920 mRNA_4552 0.74 -0.3
444,256 - 12920 mRNA_4552 0.83 1.5
444,259 + 12920 mRNA_4552 0.83 0.8
444,265 - 12920 mRNA_4552 0.83 2.2
444,410 + 0.1
444,561 - -1.2
444,568 + -0.3
444,864 + 0.1
444,999 - -0.1
445,002 - -1.2
445,020 - -0.1
445,029 + -0.3
445,335 + -0.3