Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4537

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4536: 12904 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 404129 to 405942 12904 mRNA_4537: 12905 - KOG0472 Leucine-rich repeat protein, at 406318 to 409422 12905 mRNA_4538: 12906 - KOG2112 Lysophospholipase, at 409562 to 410663 12906

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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405,396 + 12904 mRNA_4536 0.70 0.6
405,893 + -1.4
405,898 - 0.5
405,907 + 0.4
406,069 + 0.5
406,200 + 0.2
406,200 + -0.8
406,350 + -0.3
406,800 + 12905 mRNA_4537 0.16 -1.2
407,077 + 12905 mRNA_4537 0.24 1.2
407,205 - 12905 mRNA_4537 0.29 0.7
407,648 - 12905 mRNA_4537 0.43 -0.6
407,662 + 12905 mRNA_4537 0.43 -0.8
407,900 - 12905 mRNA_4537 0.51 -0.1
408,089 + 12905 mRNA_4537 0.57 -1.5
408,683 + 12905 mRNA_4537 0.76 0.5
408,686 - 12905 mRNA_4537 0.76 1.6
408,879 + 12905 mRNA_4537 0.82 0.0
409,202 - -1.2
409,398 - -0.1