Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4503

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332888 to 334792 12870 mRNA_4503: 12871 - K12397 AP3B AP-3 complex subunit beta, at 335099 to 337846 12871 mRNA_4504: 12872 - Hypothetical Protein, at 338393 to 338917 12872

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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334,198 + 12870 mRNA_4502 0.69 0.2
334,410 - 12870 mRNA_4502 0.80 -0.8
334,417 + 12870 mRNA_4502 0.80 0.6
334,417 + 12870 mRNA_4502 0.80 0.5
334,420 - 12870 mRNA_4502 0.80 -1.0
334,423 - 12870 mRNA_4502 0.81 -0.7
334,424 + 12870 mRNA_4502 0.81 0.1
334,441 + 12870 mRNA_4502 0.82 -0.0
334,541 - 12870 mRNA_4502 0.87 0.3
334,545 - 12870 mRNA_4502 0.87 0.8
334,730 - -0.6
334,839 - 0.6
334,980 + 2.0
335,003 + 0.2
335,004 - 0.6
335,016 + -0.0
335,027 + -0.6
335,036 + 0.3
335,038 - 0.6
335,306 - 0.5
335,328 + -0.8
335,635 + 12871 mRNA_4503 0.20 0.8
336,585 + 12871 mRNA_4503 0.54 -0.6
336,943 + 12871 mRNA_4503 0.67 0.7
338,090 - 0.4
338,237 - 0.9
338,243 - -1.0
338,248 + -0.3
338,279 + -1.3
338,400 - 0.9
338,402 - -0.2
338,412 + -0.3
338,422 + -0.7
338,682 + 12872 mRNA_4504 0.55 1.8
338,699 + 12872 mRNA_4504 0.58 -0.6
338,699 + 12872 mRNA_4504 0.58 1.2