Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4500

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4499: 12867 - K01968 E6.4.1.4A 3-methylcrotonyl-CoA carboxylase alpha subunit, at 323884 to 327513 12867 mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327724 to 330564 12868 mRNA_4501: 12869 - Hypothetical Protein, at 330737 to 332545 12869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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327,285 - 1.1
327,422 + -0.0
327,434 - -0.9
327,437 + -0.1
327,447 + -0.4
327,674 + 0.7
327,798 - 0.3
328,363 - 12868 mRNA_4500 0.22 0.1
328,485 - 12868 mRNA_4500 0.27 -0.8
328,649 + 12868 mRNA_4500 0.33 -1.4
329,114 + 12868 mRNA_4500 0.49 0.2
329,220 - 12868 mRNA_4500 0.53 0.4
329,291 - 12868 mRNA_4500 0.55 -0.8
329,505 + 12868 mRNA_4500 0.63 0.1
329,512 + 12868 mRNA_4500 0.63 -1.0
329,557 - 12868 mRNA_4500 0.65 1.4
329,729 - 12868 mRNA_4500 0.71 1.9
329,780 - 12868 mRNA_4500 0.72 0.5
329,795 - 12868 mRNA_4500 0.73 0.1
330,197 - 12868 mRNA_4500 0.87 -0.4
330,361 + 0.8
330,364 - 1.2
330,476 - 0.8
330,512 + -0.6
330,523 + -1.3
330,644 + 0.1
330,655 - -0.1
330,674 + -0.2
331,045 + 12869 mRNA_4501 0.17 0.1
331,223 - 12869 mRNA_4501 0.27 0.8