Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4489

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301518 to 302496 12856 mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302712 to 304024 12857 mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304461 to 305865 12858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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302,582 - -0.1
302,596 - -0.2
302,620 + 2.2
302,643 + -0.3
302,762 + 0.4
302,764 - -0.2
302,884 + 12857 mRNA_4489 0.13 0.4
303,064 - 12857 mRNA_4489 0.27 -0.3
303,201 - 12857 mRNA_4489 0.37 -0.6
303,480 - 12857 mRNA_4489 0.58 -0.3
303,490 - 12857 mRNA_4489 0.59 -0.1
303,781 - 12857 mRNA_4489 0.81 0.8
303,796 + 12857 mRNA_4489 0.83 2.2
303,924 - -0.6
303,937 - -0.3
304,081 - 0.2
304,083 + 0.4
304,112 + -0.4
304,112 + -0.2
304,122 + 1.1
304,123 - -0.5
304,174 - -0.3
304,196 - 1.4
304,234 + -0.8
304,271 + -2.3
304,316 - -0.3
304,338 + -0.1
304,668 - 12858 mRNA_4490 0.15 2.6
304,947 + 12858 mRNA_4490 0.35 0.1