Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4484

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4483: 12851 - SUPERFAMILY--SSF53098, at 287945 to 289726 12851 mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289880 to 293833 12852 mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294056 to 296303 12853

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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289,635 - -0.2
289,729 - 1.1
289,731 - 0.5
289,749 + 0.5
289,749 + 1.0
290,496 - 12852 mRNA_4484 0.16 0.7
290,556 + 12852 mRNA_4484 0.17 -0.1
290,577 + 12852 mRNA_4484 0.18 -0.0
290,625 - 12852 mRNA_4484 0.19 0.3
290,747 + 12852 mRNA_4484 0.22 0.3
290,815 + 12852 mRNA_4484 0.24 -0.0
290,939 + 12852 mRNA_4484 0.27 1.2
291,077 - 12852 mRNA_4484 0.30 1.4
291,314 - 12852 mRNA_4484 0.36 -0.1
291,745 - 12852 mRNA_4484 0.47 2.6
292,992 + 12852 mRNA_4484 0.79 0.2
293,000 - 12852 mRNA_4484 0.79 0.6
293,013 + 12852 mRNA_4484 0.79 0.2
293,091 - 12852 mRNA_4484 0.81 0.2
293,557 + -0.9
293,584 + -1.0
293,627 + 0.9
293,743 + 1.3
293,855 - 0.3
293,910 - -0.6
293,911 - -0.1
293,919 - 0.0
293,921 - -1.0
293,926 - 1.0
293,929 + -1.2
293,931 - -0.0
293,934 + -1.2
293,943 - -0.3
293,970 + 0.3
293,975 + 1.3
293,996 + -0.1
294,080 + 1.3
294,084 + 0.3
294,256 - 0.3
294,357 - 12853 mRNA_4485 0.13 0.2
294,608 - 12853 mRNA_4485 0.25 -0.4
294,658 - 12853 mRNA_4485 0.27 0.7
294,810 - 12853 mRNA_4485 0.34 0.1