Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4415

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4414: 12782 - BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [..., at 129803 to 130566 12782 mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131419 to 134157 12783 mRNA_4416: 12784 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 134508 to 136011 12784

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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130,452 + 12782 mRNA_4414 0.85 0.2
130,541 + 0.8
130,622 + 0.6
130,786 - 1.2
131,085 - -0.8
131,087 - -0.4
131,213 - 0.5
131,256 - 0.7
131,478 - -0.5
131,478 + 0.1
131,546 + 0.2
131,651 + -1.0
131,944 + 12783 mRNA_4415 0.19 1.1
131,944 + 12783 mRNA_4415 0.19 -0.5
131,944 + 12783 mRNA_4415 0.19 0.5
131,969 + 12783 mRNA_4415 0.20 -1.2
131,978 - 12783 mRNA_4415 0.20 -0.3
132,074 - 12783 mRNA_4415 0.24 -1.1
132,080 - 12783 mRNA_4415 0.24 -0.3
132,102 - 12783 mRNA_4415 0.25 -0.2
132,107 + 12783 mRNA_4415 0.25 -1.4
132,230 - 12783 mRNA_4415 0.30 0.3
132,234 - 12783 mRNA_4415 0.30 0.4
132,236 - 12783 mRNA_4415 0.30 1.0
132,308 + 12783 mRNA_4415 0.32 -0.1
132,330 - 12783 mRNA_4415 0.33 -0.4
132,374 - 12783 mRNA_4415 0.35 -0.2
132,493 + 12783 mRNA_4415 0.39 -1.9
132,513 + 12783 mRNA_4415 0.40 0.5
132,563 + 12783 mRNA_4415 0.42 -0.6
132,592 - 12783 mRNA_4415 0.43 0.0
132,592 - 12783 mRNA_4415 0.43 -0.2
132,744 + 12783 mRNA_4415 0.48 0.2
132,899 + 12783 mRNA_4415 0.54 0.0
132,913 + 12783 mRNA_4415 0.55 1.4
133,152 + 12783 mRNA_4415 0.63 -0.4
133,160 + 12783 mRNA_4415 0.64 0.3
133,258 - 12783 mRNA_4415 0.67 -0.6
133,280 - 12783 mRNA_4415 0.68 0.4
133,303 + 12783 mRNA_4415 0.69 -0.3
133,446 + 12783 mRNA_4415 0.74 -0.2
133,470 + 12783 mRNA_4415 0.75 1.2
133,511 + 12783 mRNA_4415 0.76 1.4
133,552 + 12783 mRNA_4415 0.78 0.6
133,620 - 12783 mRNA_4415 0.80 0.7
133,671 + 12783 mRNA_4415 0.82 1.0
133,700 + 12783 mRNA_4415 0.83 0.0
133,701 + 12783 mRNA_4415 0.83 -2.0
133,707 - 12783 mRNA_4415 0.84 -0.6
134,039 + -0.2
134,560 + 0.1
134,596 + -0.1
134,625 - 0.7
134,728 + 12784 mRNA_4416 0.15 -0.3
134,875 + 12784 mRNA_4416 0.24 0.4
135,073 - 12784 mRNA_4416 0.38 1.0
135,143 + 12784 mRNA_4416 0.42 0.2
135,149 + 12784 mRNA_4416 0.43 1.3