Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4399

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4398: 12766 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 91356 to 92891 12766 mRNA_4399: 12767 - HMMPfam-CFEM domain-PF05730, at 93703 to 94660 12767 mRNA_4400: 12768 - Hypothetical Protein, at 95230 to 97148 12768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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92,706 + 12766 mRNA_4398 0.88 0.8
92,783 + 0.4
92,785 - 0.1
92,809 + -0.0
92,916 + -0.4
92,925 + 0.1
92,927 - -1.7
92,932 - 1.0
92,950 - 0.5
92,962 - -0.6
92,964 + 0.1
92,967 - 1.0
92,972 - 0.5
92,989 - 0.6
93,028 + 0.0
93,095 + 0.1
93,121 - -1.0
93,151 - -0.6
93,265 - -0.3
93,268 - 0.8
93,269 - 0.1
93,283 - 0.3
93,284 + -1.4
93,416 - -1.2
93,565 + -0.2
93,966 - 12767 mRNA_4399 0.27 0.1
93,999 - 12767 mRNA_4399 0.31 -0.2
94,018 - 12767 mRNA_4399 0.33 1.1
94,273 + 12767 mRNA_4399 0.59 -0.0
94,433 - 12767 mRNA_4399 0.76 1.0
94,445 + 12767 mRNA_4399 0.77 0.0
94,459 - 12767 mRNA_4399 0.79 -0.7
94,574 - -1.1
94,604 - -0.5
95,006 + 0.2
95,145 + -0.1
95,163 + -0.2
95,172 + 0.6
95,273 + 0.3
95,468 + 12768 mRNA_4400 0.12 -0.3