Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4374

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41270 to 42990 12741 mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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42,232 + 12741 mRNA_4373 0.56 0.5
42,540 + 12741 mRNA_4373 0.74 -0.1
42,735 + 12741 mRNA_4373 0.85 0.3
42,790 + 12741 mRNA_4373 0.88 -1.7
42,864 + 0.3
42,973 + -1.1
43,033 + 0.7
43,033 + 0.5
43,160 + -0.6
43,162 - -0.8
43,311 + -0.5
43,322 - -1.2
43,373 - -0.4
43,382 + -0.3
43,425 + 12742 mRNA_4374 0.10 0.5
43,437 + 12742 mRNA_4374 0.11 -0.4
43,541 - 12742 mRNA_4374 0.14 -0.6
43,542 - 12742 mRNA_4374 0.14 0.2
43,720 + 12742 mRNA_4374 0.20 -1.5
43,871 + 12742 mRNA_4374 0.25 1.1
43,896 - 12742 mRNA_4374 0.26 0.2
43,905 - 12742 mRNA_4374 0.27 1.1
43,943 - 12742 mRNA_4374 0.28 0.5
44,151 + 12742 mRNA_4374 0.35 -1.2
44,207 - 12742 mRNA_4374 0.37 -0.8
44,277 + 12742 mRNA_4374 0.39 -1.7
44,319 - 12742 mRNA_4374 0.41 -0.7
44,401 - 12742 mRNA_4374 0.44 -0.0
44,402 + 12742 mRNA_4374 0.44 -0.2
44,727 - 12742 mRNA_4374 0.55 1.1
44,761 - 12742 mRNA_4374 0.56 -0.7
44,763 - 12742 mRNA_4374 0.56 -1.3
44,781 - 12742 mRNA_4374 0.57 -0.7
44,838 - 12742 mRNA_4374 0.59 1.1
44,847 - 12742 mRNA_4374 0.59 0.2
44,873 - 12742 mRNA_4374 0.60 0.1
44,883 - 12742 mRNA_4374 0.60 -0.6
44,895 + 12742 mRNA_4374 0.61 -1.5
44,910 + 12742 mRNA_4374 0.61 -0.3
45,168 - 12742 mRNA_4374 0.70 1.3
45,173 - 12742 mRNA_4374 0.70 -0.9
45,189 + 12742 mRNA_4374 0.71 -0.2
45,445 + 12742 mRNA_4374 0.80 0.0
45,452 - 12742 mRNA_4374 0.80 0.3
45,462 + 12742 mRNA_4374 0.80 1.5
45,471 - 12742 mRNA_4374 0.81 -0.0
45,741 - 12742 mRNA_4374 0.90 0.1
45,744 - -0.7
45,744 + -0.2
45,773 + 0.1
45,906 + -2.2
45,912 - 0.1
45,918 - -0.3
45,996 - -0.2
46,018 + 0.1
46,034 - 1.5
46,055 - -0.6
46,059 + -0.2
46,060 + 0.1
46,074 + -0.5
46,155 - -0.3
46,186 + -1.3
46,189 - -0.3
46,191 + -1.3
46,192 + -1.2
46,195 - 0.7
46,201 + 0.4
46,202 + 0.4
46,203 - -1.7
46,205 + -0.3
46,208 - -0.1
46,208 - -0.1
46,217 + 1.4
46,217 + -0.4
46,219 - -0.4
46,227 - 0.3
46,230 + 1.2
46,233 + 0.3
46,235 + 1.3
46,237 - -0.9
46,237 + 1.2
46,287 + 0.3
46,334 + -0.3
46,342 - -0.1
46,346 + -0.1
46,355 + -0.7
46,355 - 0.6
46,367 + -0.8
46,367 + 0.4
46,367 - -0.2
46,368 - 1.0
46,369 - -0.1
46,383 - -0.2
46,384 + 0.4
46,387 + -0.1
46,623 - 0.2
46,759 + 12743 mRNA_4375 0.13 0.2
46,940 - 12743 mRNA_4375 0.19 0.1
46,947 - 12743 mRNA_4375 0.20 0.2
46,956 + 12743 mRNA_4375 0.20 0.1
46,976 + 12743 mRNA_4375 0.21 -1.5