Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4340

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4339: 12707 - K17677 IRC3 ATP-dependent helicase IRC3, at 1943840 to 1947247 12707 mRNA_4340: 12708 - K01074 PPT palmitoyl-protein thioesterase, at 1947671 to 1949110 12708 mRNA_4341: 12709 - K08266 MLST8, GBL target of rapamycin complex subunit LST8, at 1949173 to 1951155 12709

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,946,683 + 12707 mRNA_4339 0.83 1.3
1,946,693 + 12707 mRNA_4339 0.84 -0.1
1,946,714 + 12707 mRNA_4339 0.84 -1.1
1,946,855 + 12707 mRNA_4339 0.88 0.2
1,947,131 - 0.2
1,947,154 - -0.3
1,947,162 - 1.0
1,947,282 - 0.7
1,947,294 + 1.7
1,947,303 - -0.7
1,947,303 + 1.1
1,947,304 + -0.4
1,947,312 - 1.0
1,947,449 - -0.1
1,947,594 + -3.1
1,947,598 - -0.4
1,947,628 + 0.1
1,947,708 + -0.5
1,947,887 + 12708 mRNA_4340 0.15 -0.4
1,948,003 - 12708 mRNA_4340 0.23 -0.0
1,948,026 + 12708 mRNA_4340 0.25 0.0
1,948,451 + 12708 mRNA_4340 0.54 0.1
1,948,484 + 12708 mRNA_4340 0.56 0.8
1,948,880 - 12708 mRNA_4340 0.84 -1.2
1,949,040 + -0.2