Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4280

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4279: 12647 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1788409 to 1790808 12647 mRNA_4280: 12648 - HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806, at 1790909 to 1794329 12648 mRNA_4281: 12649 - K11778 DHDDS, RER2, SRT1 ditrans,polycis-polyprenyl diphosphate synthase, at 1794791 to 1795923 12649

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,790,030 - 12647 mRNA_4279 0.68 -0.2
1,790,208 + 12647 mRNA_4279 0.75 -0.0
1,790,215 - 12647 mRNA_4279 0.75 -1.7
1,790,368 - 12647 mRNA_4279 0.82 -0.3
1,790,457 - 12647 mRNA_4279 0.85 -0.2
1,790,535 + 12647 mRNA_4279 0.89 0.8
1,790,703 + -0.3
1,790,790 - -0.2
1,790,791 + 0.3
1,790,792 - 0.3
1,790,813 + 0.5
1,791,516 - 12648 mRNA_4280 0.18 1.4
1,791,983 + 12648 mRNA_4280 0.31 -0.0
1,792,365 - 12648 mRNA_4280 0.43 2.2
1,792,374 - 12648 mRNA_4280 0.43 0.4
1,792,399 - 12648 mRNA_4280 0.44 0.9
1,792,489 + 12648 mRNA_4280 0.46 0.0
1,792,663 + 12648 mRNA_4280 0.51 -0.6
1,793,195 + 12648 mRNA_4280 0.67 0.4
1,793,404 - 12648 mRNA_4280 0.73 0.5
1,793,420 + 12648 mRNA_4280 0.73 0.4
1,793,433 + 12648 mRNA_4280 0.74 0.5
1,793,514 - 12648 mRNA_4280 0.76 0.3
1,793,521 - 12648 mRNA_4280 0.76 1.3
1,793,558 - 12648 mRNA_4280 0.77 0.0
1,793,559 - 12648 mRNA_4280 0.77 1.8
1,793,709 + 12648 mRNA_4280 0.82 -0.3
1,793,855 - 12648 mRNA_4280 0.86 -0.0
1,793,948 - 12648 mRNA_4280 0.89 0.8
1,794,025 + 0.3
1,794,136 + 1.6
1,794,271 - 0.6
1,794,273 + 0.9
1,794,279 - 1.3
1,794,280 - 0.0
1,794,286 - 0.5
1,794,548 - 0.1