Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4222

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4221: 12589 - HMMPfam-Sodium/hydrogen exchanger family-PF00999, at 1646104 to 1647809 12589 mRNA_4222: 12590 - K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein, at 1647878 to 1648825 12590 mRNA_4223: 12591 - KOG3957 Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase, at 1648878 to 1650600 12591

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,647,021 - 12589 mRNA_4221 0.54 -0.4
1,647,286 + 12589 mRNA_4221 0.69 -0.9
1,647,610 - 12589 mRNA_4221 0.88 -1.2
1,647,772 + -0.6
1,648,068 - 12590 mRNA_4222 0.20 -0.8
1,648,351 - 12590 mRNA_4222 0.50 -2.4
1,648,383 + 12590 mRNA_4222 0.53 -1.2
1,648,424 + 12590 mRNA_4222 0.58 -0.6
1,648,507 + 12590 mRNA_4222 0.66 -2.4
1,648,519 + 12590 mRNA_4222 0.68 -1.0
1,648,539 + 12590 mRNA_4222 0.70 -2.5
1,648,795 + -0.3
1,648,823 + -0.5
1,648,872 + -1.5
1,648,923 - -0.4
1,649,142 - 12591 mRNA_4223 0.15 -0.3
1,649,400 + 12591 mRNA_4223 0.30 -0.7
1,649,543 - 12591 mRNA_4223 0.39 1.2
1,649,544 + 12591 mRNA_4223 0.39 -1.5
1,649,601 + 12591 mRNA_4223 0.42 -0.3
1,649,787 + 12591 mRNA_4223 0.53 -0.9
1,649,791 + 12591 mRNA_4223 0.53 -0.5