Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4216

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4215: 12583 - HMMPfam-RhoGAP domain-PF00620,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-Fes/CIP4 homology domain-SM00055,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF48350, at 1628939 to 1632484 12583 mRNA_4216: 12584 - K13123 GPATCH1 G patch domain-containing protein 1, at 1632633 to 1635917 12584 mRNA_4217: 12585 - K14830 MAK11, PAK1IP1 protein MAK11, at 1636236 to 1637979 12585

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,631,662 - 12583 mRNA_4215 0.77 0.1
1,631,713 - 12583 mRNA_4215 0.78 0.4
1,631,718 + 12583 mRNA_4215 0.78 -0.4
1,632,125 - 12583 mRNA_4215 0.90 -1.5
1,632,135 + -0.6
1,632,275 - -0.1
1,632,288 + -0.2
1,632,457 - -0.1
1,632,521 + -0.2
1,632,526 - 0.7
1,632,560 - 0.4
1,632,634 - -1.0
1,632,640 + 1.2
1,632,653 + -0.1
1,632,734 + -0.5
1,632,762 + 0.3
1,633,021 + 12584 mRNA_4216 0.12 -1.3
1,633,022 + 12584 mRNA_4216 0.12 -0.8
1,633,104 - 12584 mRNA_4216 0.14 -1.4
1,633,130 + 12584 mRNA_4216 0.15 -1.3
1,633,197 + 12584 mRNA_4216 0.17 -1.7
1,633,287 - 12584 mRNA_4216 0.20 -1.3
1,633,868 + 12584 mRNA_4216 0.38 -0.3
1,633,912 - 12584 mRNA_4216 0.39 0.1
1,634,279 + 12584 mRNA_4216 0.50 0.9
1,635,384 - 12584 mRNA_4216 0.84 2.5
1,635,491 + 12584 mRNA_4216 0.87 -0.0
1,635,986 - 1.2
1,635,997 - 0.2