Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4213

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4212: 12580 - KOG1968 Replication factor C, subunit RFC1 (large subunit), at 1623456 to 1625668 12580 mRNA_4213: 12581 - K01673 cynT, can carbonic anhydrase, at 1625802 to 1627146 12581 mRNA_4214: 12582 - Hypothetical Protein, at 1627604 to 1628234 12582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,624,977 - 12580 mRNA_4212 0.69 -0.9
1,624,997 + 12580 mRNA_4212 0.70 0.3
1,625,152 + 12580 mRNA_4212 0.77 -0.6
1,625,153 - 12580 mRNA_4212 0.77 0.0
1,625,154 - 12580 mRNA_4212 0.77 0.1
1,625,154 - 12580 mRNA_4212 0.77 0.0
1,625,154 - 12580 mRNA_4212 0.77 1.2
1,625,268 - 12580 mRNA_4212 0.82 0.3
1,625,295 - 12580 mRNA_4212 0.83 0.4
1,625,421 - 12580 mRNA_4212 0.89 0.7
1,625,571 - 0.5
1,625,581 - 0.6
1,625,591 + 0.0
1,625,597 + -0.1
1,625,597 + 0.3
1,626,152 - 12581 mRNA_4213 0.26 0.7
1,627,163 - -0.3
1,627,164 - 0.1
1,627,237 + -0.4
1,627,269 + -0.2
1,627,276 + -0.4
1,627,346 - 0.1
1,627,377 + -0.3
1,627,403 + -0.1
1,627,405 - -0.2
1,627,410 - -0.9
1,627,410 - -0.8
1,627,418 + -0.1
1,627,431 - -0.7
1,627,433 + 0.2
1,627,435 + -0.2
1,627,437 + 0.5
1,627,437 + -1.2
1,627,593 - -0.5
1,627,659 - -0.8
1,627,735 + 12582 mRNA_4214 0.21 -0.2
1,627,740 + 12582 mRNA_4214 0.22 -0.2
1,627,742 - 12582 mRNA_4214 0.22 0.8