Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4188

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1566413 to 1568898 12555 mRNA_4188: 12556 - KOG4372 Predicted alpha/beta hydrolase, at 1569066 to 1571020 12556 mRNA_4189: 12557 - Hypothetical Protein, at 1571432 to 1574972 12557

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,568,190 - 12555 mRNA_4187 0.71 0.5
1,568,342 - 12555 mRNA_4187 0.78 -0.7
1,568,631 - 12555 mRNA_4187 0.89 -0.8
1,568,645 - 12555 mRNA_4187 0.90 -0.3
1,568,660 + 0.1
1,568,748 - 1.0
1,568,763 - 0.3
1,568,795 - -0.4
1,568,797 + -0.8
1,568,816 + -0.2
1,568,910 - -0.8
1,568,924 - 0.0
1,568,927 + 1.3
1,568,934 - -0.3
1,568,935 + -0.1
1,568,937 - -0.4
1,568,940 + -0.2
1,568,940 + 1.2
1,568,943 - 0.4
1,568,944 - 0.2
1,568,945 - 0.1
1,568,946 + -0.3
1,568,946 - 0.2
1,568,947 - 0.8
1,568,951 - -0.2
1,568,953 - 0.7
1,568,954 - 0.2
1,568,958 + -0.0
1,568,958 - -2.5
1,568,958 + -0.2
1,568,971 - 0.1
1,568,974 - -1.6
1,568,975 + -0.1
1,568,976 - -0.1
1,568,978 + 0.4
1,568,981 + -1.5
1,569,017 - -0.2
1,569,035 + 1.4
1,569,126 + -0.2
1,569,243 - 0.1
1,569,590 + 12556 mRNA_4188 0.27 -0.3
1,569,729 + 12556 mRNA_4188 0.34 -1.5
1,569,848 - 12556 mRNA_4188 0.40 -0.8
1,569,848 - 12556 mRNA_4188 0.40 -0.3
1,570,879 - 0.7
1,570,883 + -0.6
1,571,010 - -0.9
1,571,019 + 0.7
1,571,145 - 0.1
1,571,156 + -0.4
1,571,166 + 1.2
1,571,172 - 0.0
1,571,182 + 0.6
1,571,182 + 0.1
1,571,182 + 0.5
1,571,183 + -0.9
1,571,184 - -0.6
1,571,191 + -0.1
1,571,197 - -0.5
1,571,202 - -0.0
1,571,202 - 0.3
1,571,207 + -0.3
1,571,222 + -0.2