Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4184

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4183: 12551 - K01497 ribA, RIB1 GTP cyclohydrolase II, at 1555526 to 1557851 12551 mRNA_4184: 12552 - K20989 DUR3 urea-proton symporter, at 1558379 to 1561248 12552 mRNA_4185: 12553 - KOG1212 Amidases, at 1562094 to 1563941 12553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,557,863 + 0.1
1,557,877 + 1.7
1,557,887 + -0.1
1,557,888 - -1.1
1,557,891 - -0.5
1,557,894 + 0.4
1,557,900 + -0.3
1,557,913 + -0.6
1,557,916 - 0.8
1,557,919 + -0.8
1,557,920 + 0.3
1,557,920 + -0.2
1,557,920 + 0.4
1,558,065 + 0.0
1,558,071 - -1.0
1,558,350 - -0.4
1,558,946 + 12552 mRNA_4184 0.20 1.0
1,559,062 - 12552 mRNA_4184 0.24 -0.7
1,559,473 - 12552 mRNA_4184 0.38 1.0
1,559,686 + 12552 mRNA_4184 0.46 -1.3
1,560,095 + 12552 mRNA_4184 0.60 -0.1
1,560,122 + 12552 mRNA_4184 0.61 -0.4
1,560,241 - 12552 mRNA_4184 0.65 0.2
1,560,422 - 12552 mRNA_4184 0.71 0.3
1,560,825 - 12552 mRNA_4184 0.85 0.1
1,560,930 - 12552 mRNA_4184 0.89 -0.2
1,561,234 - 0.0
1,561,534 - -1.4
1,561,606 + 0.1
1,561,872 + -0.2
1,562,022 + 0.4
1,562,165 - -0.3
1,562,167 - -0.3