Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4100

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4099: 12467 - HMMPfam-Phenolic acid decarboxylase (PAD)-PF05870,SUPERFAMILY--SSF50814, at 1359360 to 1360302 12467 mRNA_4100: 12468 - K01253 EPHX1 microsomal epoxide hydrolase, at 1360647 to 1362471 12468 mRNA_4101: 12469 - Hypothetical Protein, at 1362525 to 1362683 12469 mRNA_4102: 12470 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1362795 to 1364929 12470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,359,846 - 12467 mRNA_4099 0.52 -0.1
1,359,850 - 12467 mRNA_4099 0.52 1.8
1,359,971 + 12467 mRNA_4099 0.65 0.1
1,360,298 + 0.5
1,360,388 - 0.2
1,360,401 - -1.1
1,360,417 + 0.7
1,360,427 + 0.4
1,360,429 + 0.2
1,360,482 + -0.4
1,360,525 - 0.5
1,360,560 - -0.0
1,360,574 - -0.5
1,360,578 + 0.1
1,360,579 + -0.6
1,360,590 + 0.1
1,360,600 - -0.3
1,360,730 + -0.1
1,360,735 - -0.2
1,360,750 + 0.3
1,360,893 + 12468 mRNA_4100 0.13 -0.3
1,360,901 + 12468 mRNA_4100 0.14 0.8
1,360,902 - 12468 mRNA_4100 0.14 0.2
1,360,988 - 12468 mRNA_4100 0.19 -0.5
1,361,324 + 12468 mRNA_4100 0.37 0.1
1,361,573 + 12468 mRNA_4100 0.51 0.3
1,361,603 + 12468 mRNA_4100 0.52 -0.1
1,361,708 + 12468 mRNA_4100 0.58 -0.2
1,362,164 - 12468 mRNA_4100 0.83 -0.5
1,362,452 + -0.6
1,362,453 + -1.4
1,362,470 + -0.0
1,362,607 - 12469 mRNA_4101 0.52 0.1
1,362,613 - 12469 mRNA_4101 0.55 0.7
1,362,623 + 12469 mRNA_4101 0.62 0.6
1,362,728 - 0.1
1,362,738 - -0.1
1,362,750 - 0.9
1,362,750 + -0.4
1,362,759 - -0.5
1,362,762 + -0.5
1,362,769 - -0.5
1,362,773 + -1.3