Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4064

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4063: 12431 - K10777 LIG4, DNL4 DNA ligase 4, at 1264892 to 1269621 12431 mRNA_4064: 12432 - HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833, at 1269727 to 1270597 12432 mRNA_4065: 12433 - KOG1198 Zinc-binding oxidoreductase, at 1270736 to 1272325 12433

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,269,070 - 12431 mRNA_4063 0.88 -0.7
1,269,071 - 12431 mRNA_4063 0.88 0.1
1,269,195 - 0.6
1,270,051 + 12432 mRNA_4064 0.37 -0.1
1,270,090 + 12432 mRNA_4064 0.42 0.2
1,270,352 + 12432 mRNA_4064 0.72 0.6
1,270,365 - 12432 mRNA_4064 0.73 1.3
1,270,365 - 12432 mRNA_4064 0.73 0.9
1,270,369 - 12432 mRNA_4064 0.74 0.8
1,270,383 + 12432 mRNA_4064 0.75 1.1
1,270,644 - -1.5
1,270,646 + -0.0
1,270,650 + 0.3
1,270,663 - 0.5
1,270,664 - -0.1
1,270,664 - 0.5
1,270,664 + -0.3
1,270,667 + 0.3
1,270,671 - 0.4
1,270,804 - 0.2
1,270,807 - -0.8
1,270,808 - -1.8
1,270,901 - 12433 mRNA_4065 0.10 0.1
1,271,102 + 12433 mRNA_4065 0.23 -1.0
1,271,408 - 12433 mRNA_4065 0.42 1.6