Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4049

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4049: 12417 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1236078 to 1237368 12417

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,235,210 - -1.5
1,235,364 - 0.4
1,235,678 + -0.5
1,235,827 + 0.6
1,235,891 - -1.1
1,236,239 - 12417 mRNA_4049 0.12 0.4
1,236,386 + 12417 mRNA_4049 0.24 -1.4
1,236,549 + 12417 mRNA_4049 0.36 0.0
1,236,549 - 12417 mRNA_4049 0.36 0.7
1,236,657 - 12417 mRNA_4049 0.45 0.9
1,236,704 + 12417 mRNA_4049 0.48 -0.1
1,236,993 - 12417 mRNA_4049 0.71 -0.6
1,237,335 + -0.3
1,237,398 - -0.8
1,237,431 - -0.2
1,237,438 + -0.7
1,237,440 - -0.2
1,237,440 - 0.7
1,237,444 - 0.9
1,237,452 + 0.8
1,237,478 - -0.1
1,237,494 - -0.2
1,237,538 + 0.9
1,237,545 - -1.5
1,237,545 - 1.0
1,237,557 + -0.8
1,237,567 + -2.3
1,237,578 + -0.4
1,237,580 + -1.8
1,237,585 + 1.3
1,237,587 + -0.5
1,237,599 - -0.9
1,237,600 - 2.4
1,237,601 + -0.0
1,237,602 - -0.1
1,237,603 - -0.4
1,237,603 - -0.8
1,237,603 - -0.6
1,237,603 - 0.2
1,237,606 - 1.5
1,237,607 - -0.7
1,237,614 + -1.0
1,237,617 + 0.4
1,237,617 - -0.3
1,237,621 + 0.5
1,237,623 + 0.9
1,237,626 - 0.0
1,237,628 + -1.0
1,237,628 + 0.2
1,237,635 + -0.3
1,237,638 + -0.7
1,237,641 + 0.8
1,237,643 + 0.2
1,237,645 + 0.2
1,237,645 + -0.1
1,237,645 - 0.3
1,237,646 + 0.3
1,237,649 + 0.5
1,237,679 - -1.6
1,237,686 + 0.1
1,237,687 + -0.4
1,237,696 - -0.8
1,237,749 - 1.3
1,237,760 + -0.4
1,237,761 - -0.2
1,237,761 - 0.4
1,237,762 + -0.5
1,237,762 - 0.5
1,237,763 - 0.2
1,237,764 - -0.1
1,237,774 + 0.2
1,237,774 - -1.5
1,237,774 + -0.3
1,237,774 - -0.0
1,237,775 + -0.2
1,237,776 - -0.0
1,237,777 + 0.3
1,237,784 - 0.0
1,237,787 + -0.4
1,237,795 - 0.5
1,237,800 - 0.5
1,237,816 + -0.2
1,237,841 - -0.1
1,237,847 - 0.4
1,237,850 - -1.4
1,237,855 + -0.3
1,237,863 - -0.6
1,237,867 - -0.0
1,237,877 + 0.8
1,237,877 + 0.1
1,237,877 + 0.3
1,237,884 + 0.7
1,237,886 - 1.2
1,237,887 - 0.8
1,237,887 + 0.5
1,237,888 - 1.0
1,237,891 - 0.1
1,237,893 + -0.8
1,237,893 - 0.4
1,237,894 + 0.0
1,237,905 + 0.0
1,237,906 - -0.5
1,237,907 - 0.9
1,237,908 + -0.3
1,237,909 - -0.4
1,237,914 - -0.2
1,237,926 + -0.3
1,237,937 - 0.4
1,237,939 - -0.8
1,237,962 - -0.4
1,237,964 + 0.1
1,237,968 + 0.2
1,237,998 - -0.8
1,238,001 - -1.1
1,238,007 - 0.8
1,238,022 - 0.3
1,238,023 + 0.7
1,238,052 + 0.3
1,238,055 - -0.1
1,238,064 - -0.1
1,238,064 + -0.4
1,238,067 - 0.9
1,238,074 + -0.4
1,238,074 + -1.2
1,238,088 - -0.2
1,238,089 - -0.8
1,238,111 + -2.0
1,238,171 + -0.6
1,238,176 + -0.6
1,238,180 - -1.9
1,238,186 + -1.7
1,238,205 - 0.1
1,238,207 - 0.8
1,238,213 - -0.1
1,238,218 + -0.5
1,238,221 - -0.7
1,238,223 + -0.4
1,238,225 + 1.1
1,238,237 - 0.7
1,238,248 + 1.5
1,238,249 - 0.2
1,238,249 - 0.8
1,238,251 + 0.1
1,238,251 - 0.5
1,238,254 - 0.4
1,238,258 + 1.3
1,238,261 + 0.1
1,238,267 + -0.2
1,238,286 - -1.2
1,238,286 + -0.7
1,238,287 - 1.0
1,238,319 + 1.3
1,238,322 - -0.1
1,238,323 + -1.3
1,238,325 + -0.9
1,238,367 - 0.1