Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3990

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3989: 12357 - BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ..., at 1085634 to 1087441 12357 mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1087567 to 1089527 12358 mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1089725 to 1094754 12359

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,087,507 + 0.3
1,087,528 - -1.3
1,087,538 + -0.7
1,087,539 + 0.3
1,087,700 + 1.5
1,088,123 + 12358 mRNA_3990 0.28 -0.4
1,088,430 + 12358 mRNA_3990 0.44 -0.7
1,088,563 + 12358 mRNA_3990 0.51 -0.7
1,089,465 + 0.6
1,089,480 + 0.5
1,089,944 - 1.1
1,090,396 + 12359 mRNA_3991 0.13 -0.6