Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3973

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3972: 12340 - K11594 DDX3X, bel ATP-dependent RNA helicase DDX3X, at 1029366 to 1031642 12340 mRNA_3973: 12341 - HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475, at 1032513 to 1033671 12341 mRNA_3974: 12342 - K02350 POLZ1, rev3 DNA polymerase zeta, at 1033703 to 1040837 12342

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,031,664 - 0.2
1,031,982 - 0.9
1,032,147 - -0.2
1,032,163 + -0.7
1,032,170 - 0.3
1,032,192 + 0.2
1,032,317 + 0.2
1,032,438 + -2.0
1,032,457 - -0.0
1,032,470 + -1.0
1,032,477 - -1.1
1,032,613 + -0.1
1,032,703 - 12341 mRNA_3973 0.16 0.5
1,032,735 + 12341 mRNA_3973 0.19 -0.6
1,033,051 + 12341 mRNA_3973 0.46 -0.6
1,033,210 + 12341 mRNA_3973 0.60 -0.4
1,033,224 + 12341 mRNA_3973 0.61 -0.7
1,033,445 - 12341 mRNA_3973 0.80 0.3
1,033,607 - -0.0
1,033,760 - -0.4
1,033,780 + -1.8
1,033,805 + -1.4
1,033,938 + -0.1
1,034,015 + 0.5
1,034,074 - 0.6
1,034,077 + 0.2
1,034,082 + -0.1
1,034,373 + 0.4