Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3954

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3953: 12321 - Hypothetical Protein, at 983358 to 984692 12321 mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985055 to 988023 12322 mRNA_3955: 12323 - K02355 fusA, GFM, EFG elongation factor G, at 988308 to 991427 12323

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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984,124 + 12321 mRNA_3953 0.57 0.6
984,503 + 12321 mRNA_3953 0.86 -0.5
984,513 - 12321 mRNA_3953 0.87 0.8
984,616 - -0.8
984,643 + -0.8
984,645 - -0.7
984,647 - 1.4
984,651 - 0.2
984,659 - -0.6
984,661 - -1.6
984,667 + -0.1
984,667 + 0.4
984,667 + -0.3
984,670 - 0.6
984,799 - 0.7
984,800 + 0.2
984,801 - -0.4
984,805 + -0.3
984,823 - 0.3
984,957 - 0.1
984,971 + 0.0
984,975 - 0.3
984,987 + -0.6
984,995 - -0.5
984,997 + -0.4
985,020 + 0.5
985,060 - -0.1
985,115 - 0.2
985,117 - -0.8
985,253 - -0.9
985,411 - 12322 mRNA_3954 0.12 -0.2
985,439 - 12322 mRNA_3954 0.13 0.5
985,568 - 12322 mRNA_3954 0.17 -2.1
985,570 + 12322 mRNA_3954 0.17 -0.6
985,704 + 12322 mRNA_3954 0.22 -0.7
986,291 - 12322 mRNA_3954 0.42 0.7
986,590 + 12322 mRNA_3954 0.52 -0.3
986,590 + 12322 mRNA_3954 0.52 1.9
986,725 - 12322 mRNA_3954 0.56 0.2
987,016 + 12322 mRNA_3954 0.66 -0.4
987,195 + 12322 mRNA_3954 0.72 0.1
987,300 - 12322 mRNA_3954 0.76 -1.1
987,657 + 12322 mRNA_3954 0.88 -1.2
987,847 + 1.1
988,046 + -0.2
988,161 - -0.2
988,164 + 1.9
988,167 + 0.4
988,170 - -0.1
988,174 + -0.1
988,188 + -0.3
988,199 + -0.3