Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3928

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921437 to 922417 12295 mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922643 to 925532 12296 mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925744 to 929341 12297

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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922,450 - -1.2
922,468 - 0.4
922,517 + -0.1
922,519 - 2.0
922,522 - -1.7
922,523 - 1.0
922,523 - 0.1
922,542 - 0.2
922,542 + 0.9
922,543 + -0.3
922,562 - -0.6
922,564 + 1.4
922,564 + 2.2
922,564 + 0.4
922,565 - 0.3
922,568 + 0.3
922,569 - 0.4
922,569 - 0.4
922,572 + -0.1
922,573 + 0.2
922,575 + -0.2
922,577 - 0.9
922,579 - -0.2
922,581 + -0.8
922,587 + -0.3
922,587 - -0.1
922,591 + -0.7
922,598 + 0.2
922,607 + -1.5
922,746 - -0.2
922,859 - -0.5
922,905 + -1.0
923,042 - 12296 mRNA_3928 0.14 0.9
923,181 - 12296 mRNA_3928 0.19 0.1
923,183 + 12296 mRNA_3928 0.19 -0.7
923,463 - 12296 mRNA_3928 0.28 -0.1
924,349 - 12296 mRNA_3928 0.59 -0.4
924,963 + 12296 mRNA_3928 0.80 0.1
925,369 + -0.2
925,375 - 0.1
925,439 - 0.7
925,488 + -0.3
925,753 - -0.3
925,762 - -1.3
925,770 + 1.1
925,786 - -0.3
925,794 - -1.1
925,796 - -0.4
925,813 - 1.5
925,815 + -0.2
925,824 + 0.0
925,833 + -0.1
925,835 - -0.8
925,838 + -0.2
925,839 - -0.5
925,840 - 0.3
925,841 + -0.3
925,976 - -0.7
926,107 - 12297 mRNA_3929 0.10 -0.5
926,131 - 12297 mRNA_3929 0.11 -0.6
926,161 + 12297 mRNA_3929 0.12 0.2
926,322 + 12297 mRNA_3929 0.16 0.5