Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3920

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3919: 12287 - KOG4020 Protein DRE2, required for cell viability, at 897887 to 899209 12287 mRNA_3920: 12288 - K12767 RIM15 serine/threonine-protein kinase RIM15, at 899540 to 908734 12288

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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899,255 + 0.4
899,289 + -0.2
899,293 + -0.3
899,400 + 0.2
899,426 + -0.4
900,000 + -0.1
900,153 - -1.7
900,160 - -0.5
900,311 - -0.5
900,562 + 12288 mRNA_3920 0.11 -0.3
900,763 - 12288 mRNA_3920 0.13 0.3
901,485 + 12288 mRNA_3920 0.21 -1.3
901,496 + 12288 mRNA_3920 0.21 -0.2
901,909 + 12288 mRNA_3920 0.26 1.1
902,151 - 12288 mRNA_3920 0.28 0.5
902,538 - 12288 mRNA_3920 0.33 -1.2
902,580 + 12288 mRNA_3920 0.33 0.0
902,666 - 12288 mRNA_3920 0.34 0.6
903,121 + 12288 mRNA_3920 0.39 0.3
903,256 - 12288 mRNA_3920 0.40 -0.8
903,537 + 12288 mRNA_3920 0.43 0.3
903,573 + 12288 mRNA_3920 0.44 0.5
903,694 - 12288 mRNA_3920 0.45 1.6
903,819 - 12288 mRNA_3920 0.47 -0.7
903,929 - 12288 mRNA_3920 0.48 -0.6
904,010 - 12288 mRNA_3920 0.49 -0.0
904,076 - 12288 mRNA_3920 0.49 0.3
904,210 + 12288 mRNA_3920 0.51 1.2
904,250 + 12288 mRNA_3920 0.51 -0.7
904,305 - 12288 mRNA_3920 0.52 -0.3
904,781 + 12288 mRNA_3920 0.57 -0.4
904,941 + 12288 mRNA_3920 0.59 0.9
905,028 + 12288 mRNA_3920 0.60 0.6
905,061 - 12288 mRNA_3920 0.60 2.0
905,076 - 12288 mRNA_3920 0.60 0.7
905,106 + 12288 mRNA_3920 0.61 -0.0
905,219 - 12288 mRNA_3920 0.62 1.0
905,346 + 12288 mRNA_3920 0.63 -0.6
905,385 - 12288 mRNA_3920 0.64 -0.2
905,720 - 12288 mRNA_3920 0.67 -0.4
907,285 - 12288 mRNA_3920 0.84 0.8
907,294 - 12288 mRNA_3920 0.84 -0.2
907,300 + 12288 mRNA_3920 0.84 -0.5
907,779 + 12288 mRNA_3920 0.90 1.4
908,313 + 0.4
908,422 - -0.1
908,447 - -0.3
908,593 - -0.6
908,608 + 0.7
908,645 - -0.2
908,754 + 0.6
908,772 + 0.1
908,782 + -0.6
908,782 + 0.1
908,787 - -0.0
908,788 + -0.5
908,932 - -1.3
908,933 - -1.9
908,993 + 1.9
909,062 + 0.4
909,070 - 0.2
909,078 - 0.2
909,080 - 1.1
909,141 + 0.4
909,237 - 0.1
909,367 + -0.2
909,390 - 0.1
909,407 + -0.5
909,507 + 0.8
909,519 - 1.0
909,519 - -0.5
909,560 + 0.3
909,657 + -0.0