Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3910

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872113 to 873418 12277 mRNA_3910: 12278 - KOG0587 Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases, at 874209 to 878555 12278 mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878883 to 880998 12279

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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873,278 + 12277 mRNA_3909 0.89 0.9
873,470 - 0.9
873,478 - -0.5
873,496 + -0.5
873,496 - -0.5
873,515 - -0.4
873,516 - -1.4
873,526 - 0.1
873,626 - 0.1
874,083 - -0.2
874,104 - -0.1
874,111 + -1.3
874,230 - -0.6
874,646 - 12278 mRNA_3910 0.10 0.4
874,833 - 12278 mRNA_3910 0.14 1.3
875,595 + 12278 mRNA_3910 0.32 0.4
876,587 - 12278 mRNA_3910 0.55 -0.2
876,915 - 12278 mRNA_3910 0.62 -0.0
876,978 - 12278 mRNA_3910 0.64 -0.1
877,144 + 12278 mRNA_3910 0.68 -0.2
877,194 + 12278 mRNA_3910 0.69 -0.3
877,620 + 12278 mRNA_3910 0.78 0.2
877,905 - 12278 mRNA_3910 0.85 -0.7
878,012 - 12278 mRNA_3910 0.87 0.7
878,142 + -1.6
878,284 + 0.0
878,492 - -0.1
878,526 + -0.3
878,636 + -0.6
878,638 - 1.3
878,645 - 0.0
878,665 + -1.1
878,667 + 0.1
878,788 - 0.1
878,791 - -0.3
878,791 - 0.4
878,796 + -1.4
878,797 + 0.1
878,805 - -0.3
878,806 + 2.0
878,827 - -0.5