Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3886

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822787 to 823648 12253 mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823913 to 825750 12254 mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826218 to 829062 12255

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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823,082 + 12253 mRNA_3885 0.34 -0.8
823,096 + 12253 mRNA_3885 0.36 1.7
823,237 + 12253 mRNA_3885 0.52 1.0
823,241 + 12253 mRNA_3885 0.53 -0.8
823,309 + 12253 mRNA_3885 0.61 0.3
823,551 + 12253 mRNA_3885 0.89 0.6
823,699 - 1.5
824,026 - 0.3
824,306 - 12254 mRNA_3886 0.21 -0.5
824,402 + 12254 mRNA_3886 0.27 0.5
824,405 - 12254 mRNA_3886 0.27 -0.1
824,421 - 12254 mRNA_3886 0.28 1.1
825,186 - 12254 mRNA_3886 0.69 -1.2
825,459 + 12254 mRNA_3886 0.84 -0.5
825,879 - 0.3
825,896 + -0.4
825,896 + -1.4
825,897 - 0.0
825,908 - 0.1
825,927 - -0.3
825,934 + 2.4
825,939 + 0.5
826,041 + -0.7
826,049 + -0.6
826,050 - -0.8
826,052 + 0.4
826,122 + -0.1
826,138 - 0.9
826,149 - 0.0
826,156 + 0.7
826,157 - 1.9
826,169 - -0.2
826,302 + -0.7
826,307 - 0.1
826,338 + 0.8
826,451 + -2.0
826,464 + -1.0
826,470 - -0.4
826,489 - -0.2
826,594 - 12255 mRNA_3887 0.13 0.2
826,627 + 12255 mRNA_3887 0.14 -1.5