Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3885

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822787 to 823648 12253 mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823913 to 825750 12254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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821,791 - 0.4
821,794 - -0.4
821,803 - 0.2
821,809 + -0.2
821,811 - 0.3
821,811 - -0.2
821,814 - 2.1
821,822 - -0.1
821,835 - -0.1
821,836 + 0.2
821,841 - 0.7
821,845 + -0.3
821,849 - -0.1
821,857 - -0.2
821,866 - -0.2
821,875 - 0.9
821,876 + -0.7
821,880 - 1.1
821,881 + 0.4
821,884 + -0.0
821,896 + 0.1
821,898 - -0.7
821,899 - 0.0
821,900 - -0.9
821,902 - 0.2
821,903 + 0.1
821,907 - -1.6
821,910 - -0.3
821,910 + -0.6
821,916 - -0.8
821,918 + -0.0
821,924 - 1.3
821,925 - 0.0
821,926 + 0.6
821,931 - 1.0
821,931 + -0.7
821,935 - -0.2
821,939 - -0.2
821,940 + 0.3
821,951 - -0.9
821,954 + 0.5
821,955 - -1.0
821,962 + -0.2
821,964 - -0.2
821,967 - 0.6
821,967 + -0.5
821,970 + 1.1
821,976 + -1.1
821,988 - -0.2
821,989 + -0.2
821,999 + -0.6
821,999 - 0.9
822,026 + -0.5
822,028 - 0.7
822,042 + -0.6
822,048 + 0.2
822,061 + 0.5
822,063 - -0.1
822,068 + 0.2
822,069 + 0.1
822,071 - -0.6
822,072 - 0.1
822,079 - -0.8
822,082 - -1.3
822,082 + -0.6
822,083 - -1.0
822,084 - 0.3
822,086 - -0.2
822,087 + -0.4
822,094 + 0.1
822,097 - -0.1
822,105 + -2.2
822,105 + 0.6
822,115 - 0.2
822,117 + -0.0
822,119 - 0.0
822,127 + -0.8
822,155 + -0.0
822,159 + -1.8
822,166 - 0.1
822,187 - -1.5
822,192 + 0.3
822,197 + 0.0
822,197 - -2.3
822,213 - -1.4
822,220 + 0.0
822,224 - 0.7
822,229 + -0.1
822,246 - 0.0
822,247 - -0.3
822,257 - -0.1
822,257 - 1.1
822,260 + -0.2
822,262 - -0.2
822,265 - 0.1
822,266 + -1.5
822,290 + 0.4
822,299 - -0.7
822,300 - 0.5
822,305 - 0.8
822,311 - 0.5
822,313 + -0.4
822,314 + -0.2
822,320 + -0.9
822,325 - 0.2
822,325 - 0.0
822,330 + -0.6
822,370 - -0.8
822,374 - 0.8
822,376 + 1.3
822,384 + -0.3
822,392 - -2.1
822,400 + -0.5
822,407 - -0.1
822,413 + -1.2
822,445 + 0.0
822,457 - 0.6
822,462 + 1.1
822,470 - 0.6
822,473 + -1.8
822,484 + -0.4
822,485 - 0.7
822,485 - 0.9
822,486 + 1.1
822,495 + -0.4
822,495 - -0.9
822,515 - -0.0
822,530 - -0.9
822,531 - 1.4
822,532 + -0.8
822,534 + -0.9
822,545 + 0.4
822,554 - -0.3
822,559 + 0.6
822,559 - -0.2
822,563 + 0.1
822,569 - 0.4
822,588 + 0.3
822,591 + -0.4
822,600 + 0.1
822,611 + 0.5
822,613 + 2.1
822,614 - -0.9
822,621 - -0.4
822,621 - 1.4
822,621 - -0.3
822,624 + 0.0
822,631 - -0.3
822,638 + -0.1
822,640 - -0.1
822,657 - -1.6
822,676 + -0.6
822,757 + 1.0
822,784 - -0.6
822,787 + -1.5
822,787 - -0.5
823,082 + 12253 mRNA_3885 0.34 -0.8
823,096 + 12253 mRNA_3885 0.36 1.7
823,237 + 12253 mRNA_3885 0.52 1.0
823,241 + 12253 mRNA_3885 0.53 -0.8
823,309 + 12253 mRNA_3885 0.61 0.3
823,551 + 12253 mRNA_3885 0.89 0.6
823,699 - 1.5
824,026 - 0.3
824,306 - 12254 mRNA_3886 0.21 -0.5
824,402 + 12254 mRNA_3886 0.27 0.5
824,405 - 12254 mRNA_3886 0.27 -0.1
824,421 - 12254 mRNA_3886 0.28 1.1