Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3872

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792939 to 793930 12239 mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794856 to 799909 12240 mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800106 to 800939 12241

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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794,074 + -1.4
794,101 + -0.6
794,101 + -0.3
794,193 + 1.2
794,211 - -0.6
794,484 - 0.1
794,488 - 0.4
794,500 + -0.5
794,657 - -0.2
794,671 - -0.7
794,673 + -0.6
794,691 - -0.2
794,696 - 0.7
794,841 + -1.1
794,972 + 0.0
794,974 + 0.8
794,983 - 0.0
794,997 + 1.1
795,115 - 0.5
795,166 - -0.2
795,552 + 12240 mRNA_3872 0.14 1.5
795,582 - 12240 mRNA_3872 0.14 0.7
795,726 + 12240 mRNA_3872 0.17 0.5
795,912 + 12240 mRNA_3872 0.21 0.3
796,154 + 12240 mRNA_3872 0.26 1.4
796,297 - 12240 mRNA_3872 0.29 -0.8
796,314 + 12240 mRNA_3872 0.29 -0.6
796,410 + 12240 mRNA_3872 0.31 0.6
796,428 - 12240 mRNA_3872 0.31 -1.0
796,446 + 12240 mRNA_3872 0.31 -0.5
796,446 + 12240 mRNA_3872 0.31 -0.4
796,811 + 12240 mRNA_3872 0.39 -0.7
796,989 + 12240 mRNA_3872 0.42 -1.1
797,701 + 12240 mRNA_3872 0.56 0.3
797,756 - 12240 mRNA_3872 0.57 -0.6
797,990 + 12240 mRNA_3872 0.62 0.3
798,444 - 12240 mRNA_3872 0.71 0.8
798,501 - 12240 mRNA_3872 0.72 -0.2
798,721 + 12240 mRNA_3872 0.76 0.2
798,736 + 12240 mRNA_3872 0.77 -0.0
798,910 + 12240 mRNA_3872 0.80 -0.2
799,203 - 12240 mRNA_3872 0.86 -0.5
799,207 - 12240 mRNA_3872 0.86 1.7
799,606 - 0.4
800,119 + -0.0
800,362 - 12241 mRNA_3873 0.31 0.2
800,372 + 12241 mRNA_3873 0.32 0.3
800,537 - 12241 mRNA_3873 0.52 0.8
800,689 - 12241 mRNA_3873 0.70 0.8
800,696 + 12241 mRNA_3873 0.71 -0.6
800,696 + 12241 mRNA_3873 0.71 0.9
800,729 + 12241 mRNA_3873 0.75 0.2
800,781 - 12241 mRNA_3873 0.81 0.1
800,841 - 12241 mRNA_3873 0.88 1.4
800,845 + 12241 mRNA_3873 0.89 0.3
800,881 - 1.1