Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3857

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3856: 12224 - Hypothetical Protein, at 752921 to 753919 12224 mRNA_3857: 12225 - Interpro Mysoin-binding motif of peroxisomes, at 754082 to 757282 12225 mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757885 to 761783 12226

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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753,282 + 12224 mRNA_3856 0.36 0.2
753,655 - 12224 mRNA_3856 0.73 0.1
753,812 - 12224 mRNA_3856 0.89 0.5
753,817 - 12224 mRNA_3856 0.90 2.0
755,751 + 12225 mRNA_3857 0.52 0.6
755,850 + 12225 mRNA_3857 0.55 0.9
756,191 + 12225 mRNA_3857 0.66 0.5
756,935 - 12225 mRNA_3857 0.89 -0.6
757,046 + 0.2
757,414 + 1.2
757,514 - 0.4
757,514 + -0.7
757,681 + 0.9
757,945 - -0.8
757,947 - 1.1
758,100 + -1.2
758,250 - -0.8