Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3811

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632455 to 635215 12178 mRNA_3811: 12179 - Hypothetical Protein, at 635575 to 638591 12179 mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638841 to 639831 12180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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635,265 + 2.6
635,521 + 0.2
635,530 - 0.5
635,534 - -0.1
635,557 - 1.1
635,604 - -0.0
635,613 + 0.4
635,634 + -0.0
635,638 + 0.4
635,644 + -0.7
635,757 - 0.1
635,761 - -2.0
635,761 + -0.0
635,765 - -0.1
635,776 + 0.9
635,779 + 0.6
635,918 - 12179 mRNA_3811 0.11 -0.4
635,927 - 12179 mRNA_3811 0.12 -0.3
635,927 + 12179 mRNA_3811 0.12 0.1
636,092 - 12179 mRNA_3811 0.17 0.4
636,092 - 12179 mRNA_3811 0.17 -1.4
636,095 + 12179 mRNA_3811 0.17 0.3
636,095 + 12179 mRNA_3811 0.17 0.2
636,231 - 12179 mRNA_3811 0.22 0.3
636,550 + 12179 mRNA_3811 0.32 -0.3
636,714 + 12179 mRNA_3811 0.38 -0.5
636,807 - 12179 mRNA_3811 0.41 -0.1
637,165 + 12179 mRNA_3811 0.53 -1.1
637,192 + 12179 mRNA_3811 0.54 -0.2
637,377 + 12179 mRNA_3811 0.60 -0.9
637,461 + 12179 mRNA_3811 0.63 -1.0
637,585 - 12179 mRNA_3811 0.67 0.4
637,776 - 12179 mRNA_3811 0.73 0.3
638,387 - 0.8
638,548 + 0.6
638,683 - -0.7
638,708 - 0.5
638,723 - 0.1
638,732 + -0.2
638,752 + -0.1
638,810 - -0.4
639,118 + 12180 mRNA_3812 0.28 -0.4
639,312 - 12180 mRNA_3812 0.48 -0.2
639,452 + 12180 mRNA_3812 0.62 -0.1
639,578 + 12180 mRNA_3812 0.74 1.4