Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3777

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553955 to 556574 12144 mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557180 to 558034 12145 mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558485 to 559797 12146

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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556,367 - 0.4
556,513 + -0.4
556,517 - 0.2
556,688 - -0.3
556,810 + 0.2
556,815 - 1.1
556,818 - -1.1
556,827 + 0.1
556,832 - -0.0
556,842 - 0.8
556,880 - -0.2
556,928 - -0.2
556,973 - 0.7
556,978 - 0.7
556,980 - 0.2
556,981 - -0.0
556,983 - -1.2
557,005 - -0.1
557,007 + -0.1
557,017 + -0.6
557,027 + -0.5
557,041 + 0.8
557,322 - 12145 mRNA_3777 0.17 1.0
557,419 - 12145 mRNA_3777 0.28 1.3
557,455 - 12145 mRNA_3777 0.32 0.7
557,564 + 12145 mRNA_3777 0.45 0.6
557,597 + 12145 mRNA_3777 0.49 2.1
558,032 - 0.5
558,305 + -0.2
558,306 - -0.5
558,335 + -0.7
558,442 - -0.3
558,459 + -1.7
558,607 - -1.2
558,917 + 12146 mRNA_3778 0.33 -0.6