Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3775

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551229 to 552274 12142 mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552938 to 553662 12143 mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553955 to 556574 12144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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552,230 - 0.6
552,402 + 0.6
552,538 - 0.2
552,709 + -0.3
552,819 - 0.5
552,842 - -1.0
553,013 + 12143 mRNA_3775 0.10 -0.1
553,424 + 12143 mRNA_3775 0.67 -0.0
553,575 - 12143 mRNA_3775 0.88 -0.8
553,652 - 0.3
553,754 + -1.7
553,861 - -2.0