Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3729

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441671 to 443858 12096 mRNA_3729: 12097 - K15280 SLC35C2 solute carrier family 35, member C2, at 444211 to 445530 12097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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443,258 - 12096 mRNA_3728 0.73 1.9
443,310 - 12096 mRNA_3728 0.75 1.1
443,441 + 12096 mRNA_3728 0.81 -0.4
443,572 - 12096 mRNA_3728 0.87 1.1
443,750 - -0.8
443,791 - 0.3
443,836 - -0.3
443,837 - -0.6
443,853 + -0.7
443,880 - 0.6
443,885 + -0.8
443,898 - -0.5
443,903 - 0.9
443,903 - 0.4
443,905 + 0.4
443,911 + -0.0
443,919 + -0.9
443,920 + 0.4
443,932 - 0.1
443,933 - -0.3
443,961 + 0.3
443,962 - -0.7
443,966 - -0.9
443,973 + -0.9
444,026 - 0.9
444,032 - 0.0
444,053 - 0.9
444,055 + 1.2
444,070 + -0.0
444,081 - 0.2
444,149 + -0.9
444,158 + 0.4
444,177 + 0.1
444,186 + 0.1
444,200 + -0.3
444,218 + 0.8
444,331 + 2.2
444,620 - 12097 mRNA_3729 0.31 0.2
444,628 + 12097 mRNA_3729 0.32 1.5
445,205 - 12097 mRNA_3729 0.75 1.1
445,206 - 12097 mRNA_3729 0.75 0.9
445,238 + 12097 mRNA_3729 0.78 0.3
445,508 + -1.4
445,509 + 1.1
445,663 + 0.8
445,960 + -0.1
446,099 - 0.1
446,191 - 1.3
446,209 - 2.6
446,239 + 2.2
446,395 + -0.0
446,398 - 0.9
446,401 - 1.1
446,525 - -0.1
446,530 + 0.3